Pairwise Alignments

Query, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

 Score = 1803 bits (4669), Expect = 0.0
 Identities = 886/1086 (81%), Positives = 974/1086 (89%)

Query: 1    MSYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLR 60
            M YAELQVTTHFSFLR ASSA+ELF TA+ +GIEALGVVDRNSLAGIVRALEASRATGLR
Sbjct: 1    MRYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLR 60

Query: 61   LVIGCRLDLADGMSVLVYPTDRAAYSRLTRLITLGKSRGGKNNCLLHWDDVVAYTDGMIG 120
            LV+GCRLDL DGMS+LVYPTDRAAYSRLTRL+TLGK RGGK NC++H+DDV  Y +G+IG
Sbjct: 61   LVVGCRLDLQDGMSILVYPTDRAAYSRLTRLLTLGKGRGGKANCIIHFDDVALYAEGLIG 120

Query: 121  ILVPDLPDDLCGIQLRKMAELFGDRAYVSLCLRRRQNDQLRLHEISNLATRFKVRTVVTN 180
            ILVPDL D++C +QLRK+AE+FGDRAYVSLCLRRR NDQL+LHE++NLA + +V+T+VTN
Sbjct: 121  ILVPDLADEVCAVQLRKIAEVFGDRAYVSLCLRRRPNDQLQLHELTNLAVKHRVKTIVTN 180

Query: 181  DVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERERHADRYLKPPEEMERLFPRYRQALART 240
            DVLFHE GRRQLQD+VTCIRT  TID+VGFERERHADRYLKPPEEM RLFP Y +ALART
Sbjct: 181  DVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADRYLKPPEEMARLFPAYPEALART 240

Query: 241  MEIVRRCTFSLEELTYQYPEEAIVPGKDAQASLEHYVWQCVPDRYPEGLPPDVLKVVRHE 300
            MEIV RC FSLEEL YQYPEEA++ G  AQ SL+HY W+ V  RYPEGLP  V K +RHE
Sbjct: 241  MEIVERCRFSLEELVYQYPEEALILGMTAQQSLQHYTWEGVRARYPEGLPTHVEKTIRHE 300

Query: 301  LDLIRTMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFE 360
            L LI TMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCY+LGITSIDP TNDLLFE
Sbjct: 301  LALIETMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYVLGITSIDPETNDLLFE 360

Query: 361  RFVSQERDEPPDIDVDFEHERREEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKAL 420
            RFVSQERDEPPDIDVDFEHERREEVIQWIY+TY  +KAALC+TVTRYRA+GAIRDVGKAL
Sbjct: 361  RFVSQERDEPPDIDVDFEHERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKAL 420

Query: 421  GLPEDVIKALSSGMWSWSEEVCDRNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPG 480
             LPED+I+ LSSG+WSWSE V +R VREL LNPDDRRL LTL+LAQQLMGAPR+L QHPG
Sbjct: 421  DLPEDLIRTLSSGIWSWSETVGERQVRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPG 480

Query: 481  GFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIR 540
            GFVLTHDRLDDLVPIEPATM DRQ+IEWDKDD+EALKF+KVD+LALGMLTCMAKAF LI 
Sbjct: 481  GFVLTHDRLDDLVPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALIS 540

Query: 541  EHKDRDLDLSKIEQEDSVTYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAI 600
            EHK  D+DL+ I QED  TYAMIRKADTLGTFQIESRAQM+MLPR+KPRTFYDLV+QVAI
Sbjct: 541  EHKHEDIDLATIPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAI 600

Query: 601  VRPGPIQGDMVHPYLRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTG 660
            VRPGPIQGDMVHPYLRRREGKE VEYPTPELEAVL KTLGVPLFQESAMRVAMVCAGFTG
Sbjct: 601  VRPGPIQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTG 660

Query: 661  GEADQLRKSMATFKFTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHA 720
            GEADQLRKSMATFKFTGGVS+FKDKLV+GM+RNGY  EFAEKTFSQLEGFGSYGFPESHA
Sbjct: 661  GEADQLRKSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHA 720

Query: 721  ASFALIAYASSYIKCHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRW 780
            ASFALIAYAS+YIKC++P+ FCAAL+NSQPMGFYAPAQIV DAR HGVEVRP+CINRSRW
Sbjct: 721  ASFALIAYASNYIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRW 780

Query: 781  DCTLERIGNSDRHAVRLGFRQVKGLAVADAARVVAARMNNAFVSVDDMWRRSGVPSEALV 840
            DC LE I  S  HAVRLG R V+GLA ADAAR+VAAR +  F SVDDMWRRSGVP  +LV
Sbjct: 781  DCMLEPIDGSGGHAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRRSGVPVASLV 840

Query: 841  QLAKADAFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREMAAIAEQQEPGVALRQMTD 900
            +LA+ADAFLPSL LERRDALWAIKALRDEPLPLF AAA+RE  AIAEQ+EP V LRQMTD
Sbjct: 841  ELAEADAFLPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIAEQEEPEVELRQMTD 900

Query: 901  GHNVIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQKPG 960
            G NV+EDYSHTGLTLR+HP+ F+R DL+ R I+TCA+AM + DG+W+  AGLVLVRQ+PG
Sbjct: 901  GQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRPG 960

Query: 961  SAKGVMFITIEDETGPANLVVWPTLFEKRRRAVLGSSMMAINGRIQREGEVVHLVAQQLF 1020
            SAKGVMFITIEDETG AN+VVWP LFE+ RR VLG+SMMAINGRIQREGEVVHLVAQQLF
Sbjct: 961  SAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRIQREGEVVHLVAQQLF 1020

Query: 1021 DLSGDLTGLADRDEEFKLPAGRGDEFAHGSPGSSDTRDKSKPVVAPRDIFTPDLHIDTLK 1080
            DLS DL+ LA+RD  F+ P GRGDEFAHGSPGS+D+R K+ P V  RDI  PDLHIDTLK
Sbjct: 1021 DLSADLSSLAERDGAFRPPTGRGDEFAHGSPGSADSRGKAPPGVRARDILVPDLHIDTLK 1080

Query: 1081 IKSRNF 1086
            IKSRNF
Sbjct: 1081 IKSRNF 1086