Pairwise Alignments

Query, 555 a.a., ABC transporter, nucleotide binding/ATPase protein (peptide) from Agrobacterium fabrum C58

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  429 bits (1103), Expect = e-124
 Identities = 248/561 (44%), Positives = 355/561 (63%), Gaps = 47/561 (8%)

Query: 1   MAIPLLGVRDLSVRYHSRSGEAVAVENLSFDIAAGEAVALVGESGCGKSTTALALSNLLP 60
           M+  L+ +RDLSV ++ ++     V NL  DI  GE +ALVGESG GKS TA ++  LLP
Sbjct: 7   MSDNLIEIRDLSVAFNDQT----VVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLP 62

Query: 61  D-EASSSGEVTFDGLDLFRLPPKAWRPILGPRIGMIFQEPMSALNPVYTVGDQIAEVLHA 119
           + EA +SG + + G +L     +A R + G RI MIFQEPM++LNP+++V  QI E L  
Sbjct: 63  ENEAHTSGSIRYRGQELVGADTQALRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLML 122

Query: 120 HERLSRKAARSRVLELLDLVSMPEPHRRIASYPHELSGGQRQRAMIAQAIALTPLLLIAD 179
           H+ L  KAAR R+LELL LV +  P  R+ +YPH+LSGGQRQR +IA A+A  P LLIAD
Sbjct: 123 HKGLGGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELLIAD 182

Query: 180 EPTTALDSTIQSQILELIDRLRRDLSMGLLLISHDLTLVSRWTDRVVVMHNGKRMEELKA 239
           EPTTALD T+Q +IL L+  L++ L M LLLISHDL LV     RV VM  G+ +E+   
Sbjct: 183 EPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPC 242

Query: 240 EHLFQESQHPYTKGLIGASIRLGDGRHASSERLNEIRTHRNSNGTTSFEIRSPPVAAEPR 299
           E LF   +HPY+  L+ A                                  P   A PR
Sbjct: 243 ETLFSAPKHPYSCELLHA---------------------------------EPEGEALPR 269

Query: 300 TNATADALLEVEDLTVRYDPA------SKTPPAVDRVTFELLRGETLGLVGESGSGKSSL 353
            +   + +L+V+DL V +  +       +   AVD ++  + RG+TLG+VGESGSGKS+L
Sbjct: 270 DD--REEVLQVQDLRVSFPLSGGLFRRKEYLRAVDGISLSIQRGKTLGIVGESGSGKSTL 327

Query: 354 SKALSRLIPVAGGQILFEGQDITHAGGADLRAFRGRVQMIFQDPYSSLNPRRTVGDILDS 413
            +A+ RLI  + G I F+GQ + H     LR +R ++Q++FQDP+ SL+PR +V  I+  
Sbjct: 328 GQAILRLIE-SEGSIRFQGQALDHLSQKALRPWRKQMQVVFQDPFGSLSPRMSVQQIISE 386

Query: 414 VLHAHKYRNSADRQSRISEALDQVRLPRSAVERFPHEFSGGQRQRIAIARALIVRPSLVI 473
            L  H+  +    ++R+ +AL +V L  +   R+PHEFSGGQRQRIAIARAL+++P+L++
Sbjct: 387 GLEVHQPSSPEQCEARVIQALKEVGLDPATRHRYPHEFSGGQRQRIAIARALVLKPALIL 446

Query: 474 CDEPVSALDVSVQAQILNLLADLKEEAGLSYLFISHDLAVVKYISDRIMVMKDGHIIERG 533
            DEP SALD +VQ Q++ LL  L+++  L+YLFISHDLAVV+ ++  ++V+KDG ++E+G
Sbjct: 447 LDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFISHDLAVVRALAHDMIVIKDGKVVEQG 506

Query: 534 NHQNLWSNPSHEYTRKLIAAA 554
              +++ +P H YT++L+AAA
Sbjct: 507 ASHDVFDSPQHPYTKELLAAA 527