Pairwise Alignments

Query, 435 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

Subject, 338 a.a., Periplasmic sugar-binding domain protein from Pseudomonas fluorescens FW300-N2E2

 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 63/266 (23%), Positives = 101/266 (37%), Gaps = 30/266 (11%)

Query: 96  QSAAAAGAKLFLIVSADGSSLKRIARTAQEGGGYVVNVGNNIPWTSPIDAGTGFAQAIVA 155
           Q A  +G KLFL+ +   S   R+   AQ+G      +G+ +P                 
Sbjct: 75  QLAQGSGIKLFLVNNTLTSDQARLL--AQQGAPPPELLGSLVP----------------- 115

Query: 156 REDGNRGGNMY--EAVKYTIGLAVKKFGPDAKFLHITGSKGSSYDNLRTAAVKRALAEFP 213
             D  R G +   E ++    LA    G     L  +G K +    LR   + RALAE P
Sbjct: 116 --DDERSGYLMLTELLRQHGPLAP---GQTLDLLAFSGKKSTPSAQLREKGLYRALAEHP 170

Query: 214 GVTIAGSLPGNWSAEEGQKATEDLIARHGVPNGIIAQNDGSLTGVLAALRGLKIEAGEEV 273
            V +   + G W+ E   +    L  R+     + + ND    G + A      + G++V
Sbjct: 171 QVHLRQLVYGEWNRERSYEQASQLAKRYPQTALVWSANDEMALGAMQAFEEAGRQPGKDV 230

Query: 274 LTVGADGATDIFRAIKAGKVAATAFQSPAYYGVQAVARLFDALNGYEASAPERFVGFNGL 333
           L    + +    +A   G++ +  F      G  A+  L D   G + +   R  G+N  
Sbjct: 231 LFSAMNSSRAALQARIDGRL-SVLFTGHFSLGGWAMVLLHDHARGTDLA---RHGGYNQQ 286

Query: 334 LVTKDDVDGVLARYVDNPNLPFDPKL 359
           +     +D   AR   N N   D +L
Sbjct: 287 IDLMQSLDPARARAWLNMNPAKDYRL 312