Pairwise Alignments

Query, 435 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 64/274 (23%), Positives = 106/274 (38%), Gaps = 26/274 (9%)

Query: 53  LLLLSNEWNTIINDAAKRAAAVLGLPYSSATFNLNDGTAVTQAQSAAAAGAKLFLIVSAD 112
           L  L+N +   + D A+  A  LG          +    ++  +     G K  LI   D
Sbjct: 33  LSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQNDPSKELSNVEDLTVRGVKAILINPTD 92

Query: 113 GSSLKRIARTAQEGGGYVVNVGNNIPWTSPIDAGTGFAQAIVARED---GNRGGNMYEAV 169
             ++    R A      V+ +           A  G   + +A ++   G   G+  EA 
Sbjct: 93  SDAVSNAIRIANRSKIPVLTLDRG--------ASRGEVVSHIASDNVVGGEMAGHFIEA- 143

Query: 170 KYTIGLAVKKFGPDAKFLHITGSKGSSYDNLRTAAVKRALAEFPGVTIAGSLPGNWSAEE 229
                    K G DAK + + G  G+S    R      A+ +   + +  S P ++   +
Sbjct: 144 ---------KIGSDAKVIQLEGIAGTSAARERGEGFMNAV-KGSKMQLLASQPADFDRTK 193

Query: 230 GQKATEDLIARHGVPNGIIAQNDGSLTGVLAALRGLKIEAGEEVLTVGADGATDIFRAIK 289
           G    E+L+A +     + AQND    G L A++     +G+ V+ VG DG  D   A++
Sbjct: 194 GLNVMENLLAANPDVQAVFAQNDEMALGALRAIQA----SGKSVMIVGFDGTDDGIAAVE 249

Query: 290 AGKVAATAFQSPAYYGVQAVARLFDALNGYEASA 323
            G++AAT  Q P   G   +      L G +  A
Sbjct: 250 RGQLAATVAQQPDMIGAIGIETADKMLKGEKVEA 283