Pairwise Alignments
Query, 528 a.a., ABC transporter, nucleotide binding/ATPase protein (ribose) from Agrobacterium fabrum C58
Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056
Score = 267 bits (683), Expect = 6e-76
Identities = 170/496 (34%), Positives = 267/496 (53%), Gaps = 25/496 (5%)
Query: 1 MRMSILSVESLTHSFGPSPALRDINLAIRSGEVVGIVGENGAGKSTLLNVLSGTLKPSRG 60
M +IL++ + +F AL +L + G V+ ++GENGAGKSTL+ VL+G G
Sbjct: 1 MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAG 60
Query: 61 TVAIGGTPVALENYYEANQRGIWRIFQDPALIGALPVYESLFLGHEKRFTRFGVLNKAKM 120
++ G PV+ + ++ GI I Q+ LI L + E++FLG E + FG + +M
Sbjct: 61 SIEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMT-SPFGRILWDEM 119
Query: 121 IDIARDLVRSMGIAVDVKHLMLNYDFATRQSLEVCRAILLPKVLGLPSGFVLFDEPTTGL 180
A L+ + + K L+ +Q +E+ +A L S ++ DEPT L
Sbjct: 120 HRKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKA------LSFESKVIIMDEPTDAL 173
Query: 181 SRAEVVRLLESMGRLRRQGAGVAFVSHRLQEVFDVCDRLIVLKDGAIVGEGPISQFDEAG 240
+ E L + LR QG G+ ++SHRL+E+F++CD + VL+DG +GE + +E G
Sbjct: 174 TDTETESLFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDG 233
Query: 241 LHRLMVGRAFESTTPGKRSTLNEEPFLVVKGLSRSSRPSAGQRLTHLTDISFNVGKGEIV 300
L +MVGR E P + + + L V GL+ S + D+SF + KGEI+
Sbjct: 234 LIEMMVGRKLEEQYP-RIAAQQGDISLEVIGLTGSG----------VHDVSFTLKKGEIL 282
Query: 301 GIGGLLGSGKGQLLRVLAGVTSHRDGTVELGGMPLAGSIAQRK-QKGIAFIPGDRSNEAV 359
G+ GL+G+G+ +L++V+ G G + L G + Q GIA+I DR + +
Sbjct: 283 GVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGL 342
Query: 360 VVTADVASNISLPSGHAGARGFSNAFGIWRSAREQNVARQMIVSLRIKAVSG-QPLRTLS 418
V+ V N+SL + ++G R A E I IK S Q + LS
Sbjct: 343 VLGLSVKENMSLCALDQLSKGVQI-----RHADEVIAVDDFIRLFNIKTPSREQIIGNLS 397
Query: 419 GGNQQKVSLARWIHREPVLLLIENPTAGVDVGAKREIYALLRDLTAHGTSILYVTDDLPE 478
GGNQQKV++A+ + +P +L+++ PT GVDVGAK+EIY L+ A G SI+ V+ ++PE
Sbjct: 398 GGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPE 457
Query: 479 LISLSDRILIMRDGRI 494
++ +SDRIL+M +GRI
Sbjct: 458 VLGMSDRILVMHEGRI 473
Score = 88.2 bits (217), Expect = 6e-22
Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 16/244 (6%)
Query: 287 LTDISFNVGKGEIVGIGGLLGSGKGQLLRVLAGVTSHRDGTVELGGMPLAGSIAQRKQ-K 345
L S NV G ++ + G G+GK L++VL G+ S G++E G P++ + Q
Sbjct: 21 LDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQGQPVSFKGPRDSQLA 80
Query: 346 GIAFIPGDRSNEAVVVTADVASNISLPSGHAGARGFSNAFG--IWRSAREQNVARQMIVS 403
GI+ I + + ++ +A NI L R ++ FG +W + A Q++
Sbjct: 81 GISIIHQELN---LIPQLTIAENIFL------GREMTSPFGRILWDEMHRK--ADQLLAR 129
Query: 404 LRIKAVSGQPLRTLSGGNQQKVSLARWIHREPVLLLIENPTAGVDVGAKREIYALLRDLT 463
L +K + L LS G QQ V +A+ + E +++++ PT + ++ ++ +L
Sbjct: 130 LNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVINELR 189
Query: 464 AHGTSILYVTDDLPELISLSDRILIMRDGRIVSDIDNRQTLTTEHALVADMIGPASNEKT 523
G I+Y++ L E+ + D I ++RDG+ + + R T E L+ M+G E+
Sbjct: 190 EQGCGIVYISHRLKEIFEICDDITVLRDGKFIGEC--RVCDTNEDGLIEMMVGRKLEEQY 247
Query: 524 PIVA 527
P +A
Sbjct: 248 PRIA 251
Score = 84.0 bits (206), Expect = 1e-20
Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 12/233 (5%)
Query: 21 LRDINLAIRSGEVVGIVGENGAGKSTLLNVLSGTLKPSRGTVAIGGTPVALENYYEANQR 80
+ D++ ++ GE++G+ G GAG++ L+ V+ G L RG + + G V + +
Sbjct: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLAN 328
Query: 81 GIWRIFQD---PALIGALPVYESLFLGHEKRFTRFGVLNKAKMIDIARDLVRSMGIAVDV 137
GI I +D L+ L V E++ L + ++ + A + D +R I
Sbjct: 329 GIAYISEDRKGDGLVLGLSVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPS 388
Query: 138 KHLML-NYDFATRQSLEVCRAILL-PKVLGLPSGFVLFDEPTTGLSRAEVVRLLESMGRL 195
+ ++ N +Q + + + ++ PKVL + DEPT G+ + + + +
Sbjct: 389 REQIIGNLSGGNQQKVAIAKGLMTKPKVL-------ILDEPTRGVDVGAKKEIYQLINQF 441
Query: 196 RRQGAGVAFVSHRLQEVFDVCDRLIVLKDGAIVGEGPISQFDEAGLHRLMVGR 248
+ +G + VS + EV + DR++V+ +G I GE S+ D+ L VGR
Sbjct: 442 KAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494