Pairwise Alignments

Query, 344 a.a., ABC transporter, membrane spanning protein (ribose) from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  169 bits (429), Expect = 7e-47
 Identities = 107/296 (36%), Positives = 162/296 (54%), Gaps = 12/296 (4%)

Query: 43  ALLILIGYFAFQQPAFLSPLNLTVMGAQAGPLLLISLGATFIVLMGSIDLSVAAVAALAS 102
           ALL L+   +F  P F +  NL  +  Q     +I++G T ++L   IDLSV +V AL  
Sbjct: 37  ALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALCG 96

Query: 103 AISAVLLQK---FGTGYTTALLAVLGFGIAAGLLNSVLSTVLRLPSFIATLASSSIFTGI 159
           A +A L+           TALLA    G A G ++ ++    ++ +FIATL + ++  G+
Sbjct: 97  AFAATLVAMEVPVLVAVPTALLA----GAALGAISGIIIAKGKVQAFIATLVTMTLLRGV 152

Query: 160 MLHVLDG----TALFVNDDDFSMLANGQIIPRVPNVLLLSLLLWLVLSLTTSHTRFGRYI 215
            +   DG    T      D F+    G  +  +P  + L ++++       +HTRFGRY+
Sbjct: 153 TMVYTDGRPISTGFTDTADTFAWFGTGYTLG-IPVPVWLMVVVFAGAWYLLNHTRFGRYV 211

Query: 216 VAIGAGERVAKLSGIAINRYKTYAFVLSSTLAAIGGFFLLSRLGSATPSIGDGYLLDTVA 275
            A+G  E   +LSGI ++R K   + +   LAA+ G  + SRL SA P+ G GY LD +A
Sbjct: 212 YAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIA 271

Query: 276 AIVVGGTALTGGVGGAQRTLLGVALITILSNGLNVSGVSTFTQEIVKGVVIVIAVL 331
           A+V+GGT+L GG G    TL+G  +I  L+N LN+  VS++ Q I K VVI++AVL
Sbjct: 272 AVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVL 327