Pairwise Alignments

Query, 320 a.a., ABC transporter, substrate binding protein (nitrate/sulfonate) from Agrobacterium fabrum C58

Subject, 344 a.a., periplasmic binding protein from Sinorhizobium meliloti 1021

 Score =  135 bits (340), Expect = 1e-36
 Identities = 99/326 (30%), Positives = 156/326 (47%), Gaps = 13/326 (3%)

Query: 1   MLKKNIAKTATALVAAALLWAGSAAAETVNIGFMPFVPYSAILLAKQKGWVDEEFTKAGL 60
           +LK  +A +   +   A   AG A  + + IG      +   +L + K  +++EF+K G+
Sbjct: 13  LLKLALALSILPIAGLAPASAGEAKPDAIRIGSTA-PGHLKFILYRHKKLLEDEFSKEGI 71

Query: 61  KDVEIKWHQFAGGPPVNEAFASGALDIAALGDTPSLIAFANGIDTRFVGLACKGAKAEAL 120
           K   I+   F GG     A  SGALD   +G+ PSL   A G D + +GL+      E  
Sbjct: 72  K---IELTTFDGGSAATVALGSGALDFTYIGNNPSLRLAATGADVKLIGLSSWNRSNETQ 128

Query: 121 IVLK-DSSVKTVKDLKGKKVATLRGGNVHELLVLVLAEAGLKISDVEFLNLGLQDMGIAL 179
           IV+K DS ++ ++DLKGKKVA L G   H      L  AGL I DVE LNLG++  G AL
Sbjct: 129 IVVKPDSPIRKIEDLKGKKVAYLSGTVRHSTFAKALKAAGLSIGDVESLNLGIESSGPAL 188

Query: 180 TKGDVDAVLVWEPLLTKLDSEGVSRTLRDGAGLKSN-----LNPIVALGSFAAKHPDVLK 234
            +GDVDA++     + KL  EG +R + D AG+  +      + I   G FA K+P ++ 
Sbjct: 189 ARGDVDAIVESTGPVQKLVEEGQARVIFD-AGVSGSPEWAVPHLISVNGDFARKYPQIVA 247

Query: 235 AYLQAVKRGAEALRSDPAGSAQVLAPVVGLTPKQTELAF--SRFEWKPTVTEADQAELAD 292
             L      A    ++P  +  +     G +       +   +F   P +T+A    L  
Sbjct: 248 RLLAVDVAAARWADANPEETIAIFVKETGNSDMAVRATYPNGKFYQDPEITDAAVRALQG 307

Query: 293 SVKFLLDNHFIRQTFEVSSFADQAFF 318
              F+ D   ++   +  ++ D++F+
Sbjct: 308 EEAFMADAGLLKGKVDYRTWIDRSFY 333