Pairwise Alignments

Query, 323 a.a., conjugal transfer protein from Agrobacterium fabrum C58

Subject, 546 a.a., type II/IV secretion system ATPase subunit from Methanococcus maripaludis S2

 Score = 81.3 bits (199), Expect = 5e-20
 Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 17/231 (7%)

Query: 79  DEQPIISGELPIGGHRFEGLLPPVVS--GPSFTIRRRASRLIPLDDYVKHKIMTAAQVSV 136
           D  PI+ G LP  G R   L    VS  GPSFTIR+     I +   +    M+A   + 
Sbjct: 227 DATPIVDGSLP-DGSRINILYSGDVSLKGPSFTIRKFTDVPISITQIISWGTMSAQTAAY 285

Query: 137 LRSAIASRMNIVISGGTGSGKTTLANAVIAEIVANAPDDRIVILEDTAEIQCAAENAVAL 196
           L   +   M+I I G T SGKTT  NA++  I    P  +I   EDT+E++        L
Sbjct: 286 LWLCLEYGMSIFICGETASGKTTSLNAILPFI---KPKSKIFSCEDTSEVKPPNPVWQQL 342

Query: 197 HTSD------TIDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHSN 250
            T +       + +  LL++ +R RP+ IIVGE+R        +A  TGHP  ++T H  
Sbjct: 343 LTRERGPEESRVTLFDLLRAALRSRPNYIIVGEIRSVEGAVAFQAMQTGHP-VISTFH-- 399

Query: 251 TAMSALRRLEQLTAEVSQQPMQEVIGEAVDLIVSIERTGKGRRVREVIHVE 301
            A +  + +++LT +    P Q  +      +  +    +G+ +R V+ VE
Sbjct: 400 -AANVRKMIQRLTGDPICIP-QTFMDNLNVCLFQLAVYARGKFLRRVVSVE 448