Pairwise Alignments

Query, 241 a.a., ABC transporter, membrane spanning protein (nopaline) from Agrobacterium fabrum C58

Subject, 239 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  201 bits (510), Expect = 1e-56
 Identities = 95/227 (41%), Positives = 155/227 (68%), Gaps = 1/227 (0%)

Query: 1   MDIQLIIESFPKLL-AAVPTTLTLAFISLLIGFVVSVPVALMRLSKNRIVSSLAYGYVYI 59
           M++ L+    PKLL   +P TL L  +++ IG  +++P AL+R+  + +V +  Y +++ 
Sbjct: 1   MNLDLVATFLPKLLFEGLPVTLKLVTLAVAIGVFIAIPTALLRVHPSPLVRAFPYAFIFF 60

Query: 60  IRSTPLLVQMFLIYYGSAQFRGVLSEVGLWSSFREPWFCAILALALNTAAYTSEIIRGGI 119
            R TPLL+Q+ L+YYG +    +     LW   REP++CA++A ALNT AY++EI+RG I
Sbjct: 61  FRGTPLLIQIALVYYGLSTLPWIRENEVLWPILREPFWCALIAFALNTGAYSAEILRGAI 120

Query: 120 QSVSLGQIEAARAVGMSTFLQFRRIVFPIAIRQALPAYGNEVMLIIKSTSLASTITIVEV 179
           Q++  G++EAARA GM   L  RRI+ P A +  LPAYGNE++LI+K ++LAS+IT++++
Sbjct: 121 QAIPRGEVEAARAYGMRGLLIVRRIILPRAFQIGLPAYGNEIILILKGSALASSITLLDI 180

Query: 180 TGLAKQIISATYSPVEVFIVAGAIYLFITFVVSRLVMLAEWWLNPHM 226
           TG+A+ + +  Y+PVE F+ AG IYL + ++++R + L E  L+ H+
Sbjct: 181 TGVARLLYARYYTPVEAFVTAGVIYLILVYLLTRGLRLIERRLSRHL 227