Pairwise Alignments

Query, 269 a.a., ABC transporter membrane spanning protein from Agrobacterium fabrum C58

Subject, 295 a.a., Branched-chain amino acid ABC-type transport system, permease components from Pseudomonas stutzeri RCH2

 Score =  148 bits (373), Expect = 2e-40
 Identities = 90/263 (34%), Positives = 143/263 (54%), Gaps = 14/263 (5%)

Query: 3   VINMAHGEMVMIGAYVAVLSGIWLKTSLLLAIPLAFVVTALLGLIIERVVVRRLYGR-LL 61
           +IN AHG   M+GA+VA L   +L  S   A+ LA +V   LG+ IER ++RR+ G   L
Sbjct: 42  IINFAHGAQYMLGAFVAFLGLNYLGVSYWFALVLAPLVVGCLGMAIERGLLRRIAGEDHL 101

Query: 62  DTLLATWGIAILLQQAVRLELGLTFLGIHIEGLGAGLQNVAVPSYLQGTFRFAGADINAY 121
             LL T+G+A++++            G  ++  G    +  +P  L+G F      +  Y
Sbjct: 102 YGLLLTFGLALIVE------------GSFVKLFGVSGSSYPMPELLRGGFNLGFMFLPTY 149

Query: 122 RTFIIAVTAALTLATWFILYRTTAGMQVRAIIRNPKMAAACGIDVKRINALTFAFGSGLA 181
           R ++I     + LATW+++ RT  G  +RA   NPK+    GI+V  +  LT+ +G  LA
Sbjct: 150 RAWVIVAALVVCLATWYVIERTRLGSYLRAGTENPKLMQGFGINVPLLVTLTYGYGVALA 209

Query: 182 GVAGVMMSGFKTVFPDMGTTMVVDGFMVVVTGGVGSLFGTALSSGLLGEINALVAIGTND 241
             AGV+ +    V P MG+ +++  F VVV GG+GS+ G  ++   +G I  L  +   +
Sbjct: 210 AFAGVLAAPIYAVTPGMGSNLLIVVFAVVVIGGMGSILGAIVTGIAMGLIEGLTKVFYPE 269

Query: 242 ILARAVVFGVVILVILVKPSGLF 264
             A  VVF V++ V+L++P+GLF
Sbjct: 270 -AANTVVFLVMVAVLLIRPAGLF 291