Pairwise Alignments

Query, 298 a.a., ABC transporter membrane spanning protein (branched chain amino acid) from Agrobacterium fabrum C58

Subject, 307 a.a., ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  113 bits (283), Expect = 5e-30
 Identities = 88/309 (28%), Positives = 146/309 (47%), Gaps = 19/309 (6%)

Query: 5   DWLFFIEVLIGGLLSGVMYSLVAIGFVLIYKTSGVLNFSQG---------ALLLFAALTF 55
           D   F + L+ GL  G  Y+L+AIG+ ++Y   G++NF+ G         A +  A L  
Sbjct: 3   DIYHFFQQLVNGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIAIAGLAM 62

Query: 56  VSLVERGVPFAPAFAITFAIMVVIGIAIERVVLRPLTNKPPITLFMATLGLSYIIEGAAQ 115
           + L    +    AF  +  +    G +IER+  RPL     +   ++ +G+S  ++    
Sbjct: 63  MGLDSVPLLMTAAFIASIVVTSSYGYSIERIAYRPLRGSNRLIPLISAIGMSIFLQNTVL 122

Query: 116 LLWGTQVHGL-DLGIEDIPFDVGG---VFISQFDIFAALVAAGMVAALSAFFRYTRIGLG 171
           L   ++   + +L   +     GG   V IS   I   +V    +  L+ F   +R+G  
Sbjct: 123 LSQDSKDKSIPNLIPGNFAIGPGGAHEVLISYMQIVVFVVTLVAMLGLTLFISRSRLGRA 182

Query: 172 FRAVADDQFAALAVGLRLPWIWASVWAAAGLVALVAGLLWGARVGV--QFSLSLVVLKAL 229
            RA A+D   A  +G+    I A  +     +A +A +L   + GV    +  LV LKA 
Sbjct: 183 CRACAEDIKMANLLGINTNNIIALTFVIGAALAAIAAVLLSMQYGVINPNAGFLVGLKAF 242

Query: 230 PVLVLGGFDSILGAIIGGLLVGASEKLAEVYIGEYFGGGIEGWFAYVVALAFLLIRPSGL 289
              VLGG  SI GA++GGL++G    +AE +  + FG   +   A+ + +  LL RP+G+
Sbjct: 243 TAAVLGGIGSIPGAMLGGLVLG----VAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGI 298

Query: 290 FGQKFVERV 298
            G+  VE+V
Sbjct: 299 LGRPEVEKV 307