Pairwise Alignments

Query, 364 a.a., ABC transporter membrane spanning protein (branched chain amino acid) from Agrobacterium fabrum C58

Subject, 358 a.a., high-affinity branched-chain amino acid transport permease protein from Phaeobacter inhibens DSM 17395

 Score =  275 bits (702), Expect = 2e-78
 Identities = 150/323 (46%), Positives = 207/323 (64%), Gaps = 7/323 (2%)

Query: 22  VVLAIAYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLLTGYAGQVSLGSAAFMAVGAFA 81
           VVLA+A+LVVPFV   Y   AILLPFL  S+A +GLN+L GY GQVSLG+  FMAVGA+A
Sbjct: 31  VVLALAFLVVPFVVNDYWANAILLPFLIYSIAAIGLNILVGYCGQVSLGTGGFMAVGAYA 90

Query: 82  AYNFDLRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTK 141
            Y        + + + ++LAG   A++ I FGLPSLR++GFYLAV+TLAAQFF+ W   +
Sbjct: 91  CYKLMTAFPEMSMFIHVLLAGGITALVCIGFGLPSLRIKGFYLAVATLAAQFFLVWLFNR 150

Query: 142 FSWLSNESASGVIDAPALSLAGISFEGP----VGRYLFALTTVTALTFLAYRLVSSQTGR 197
             W  N SASG I AP   + GI   GP       Y+F+L  +     +A  L     GR
Sbjct: 151 VPWFYNYSASGQISAPERDVFGIIITGPNAPAWATYMFSLIFLAFCALVARNLTRGTVGR 210

Query: 198 NFIAVRDNETAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAFAYLRTVEPA-GFNLDRS 256
           +++A+RD + AA IIGV  L+ KL AF +S F IGV+G ++   YL  VE    F +++S
Sbjct: 211 SWMAIRDMDIAAEIIGVNPLKAKLSAFGVSGFFIGVSGALFFSVYLGAVEVGEAFGINKS 270

Query: 257 FQILFIVIIGGLASIRGAFFGAALIVVFPLVLSRLGSLLLGDVFDSGVLDMTQRIVIGAL 316
           F +LF+VIIGGL SI G+F GAA +V+ P+VL  +G  +LG  + + ++   Q +++GAL
Sbjct: 271 FLVLFMVIIGGLGSIFGSFAGAAFLVLLPVVLKVVGVDVLG--WPTDIVAHIQLVIVGAL 328

Query: 317 IILFLILEPDGLVSLWDRLKSRI 339
           I++FLI EP G+  LW   K ++
Sbjct: 329 IVIFLIAEPHGIAQLWRVAKEKL 351