Pairwise Alignments

Query, 180 a.a., ECF family RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 60.5 bits (145), Expect = 2e-14
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 39  RFVRNEDDVNDLVQETMLRGFRSLQGFTPGTALKSWLFTILRNTFCTRYKVSRRECVGLP 98
           R+V N  DV D+ QE  ++ +R++  F   +A  +WL+ I  NT         R      
Sbjct: 39  RYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASD 98

Query: 99  VGIEQS-----------MSIPADQEWRLQ-HQEVMRAILELDKDQKKALLL-IAGGTSYS 145
           V  E++           +S P +     +  + V  AI  L  D K A+ L    G SY 
Sbjct: 99  VDAEEAEFYEGGDALKELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYE 158

Query: 146 DAAAICGCRVGTIKSRVNRARESLRQKL 173
           + A +  C VGT++SR+ RARE++ +K+
Sbjct: 159 EIAEVMDCPVGTVRSRIFRAREAVEKKI 186