Pairwise Alignments

Query, 357 a.a., DNA polymerase IV from Agrobacterium fabrum C58

Subject, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

 Score =  251 bits (640), Expect = 3e-71
 Identities = 155/342 (45%), Positives = 204/342 (59%), Gaps = 12/342 (3%)

Query: 1   MRKIIHVDMDAFYASVEQRDNPELRGRPVAVGS-AAARGVVAAASYEAREFGVRSAMPSV 59
           +RKIIHVDMD F+A+VE RDNP  R   +AVG     RGV++  +Y+AR+FGVRSAMP+ 
Sbjct: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64

Query: 60  TAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIAT 119
            A + CP L  VP R  VYK+VSQQI+ IF  YT LIEPLSLDEAYLDV+E+      AT
Sbjct: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124

Query: 120 EIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLAVKK 179
            IA  IR  I Q   L ASAG++  KFLAK+ASDLNKP+G  V+TP      V+ L ++K
Sbjct: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184

Query: 180 FHGVGPATAEKMHRFGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRPDRIR 239
             GVG    EK+H+ G+  GAD++    + L   FG+ GA  +  + GIDER+V  +R R
Sbjct: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244

Query: 240 KSVGAEDTFSVDINDL----DLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYSDFTQA 295
           KSVG E TFS +I+       +   +L P  +        QR   K   +KVK++DF Q 
Sbjct: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQ-GIKVKFADFQQT 303

Query: 296 TRSRT-SALPVNGIQEILEAASALLATVYPFRRSVRLLGVTL 336
           T      AL ++   E+LE             R +RLLG+++
Sbjct: 304 TIEHVHPALELDYFHELLEQ-----VLTRQQGREIRLLGLSV 340