Pairwise Alignments

Query, 300 a.a., cultivar specificity protein W78 from Agrobacterium fabrum C58

Subject, 284 a.a., Poly(3-hydroxyalkanoate) depolymerase from Pseudomonas fluorescens FW300-N2E2

 Score = 73.2 bits (178), Expect = 7e-18
 Identities = 76/266 (28%), Positives = 112/266 (42%), Gaps = 23/266 (8%)

Query: 40  IRFAYRELGPHGGTPLVLLNHWGAVLDNFDPRIVDGLASSHHIVVLDYRGIGLSGG-TAP 98
           +R A R   PH  TPL++ N  GA L+   P  +  L     ++  D  G+G S     P
Sbjct: 17  LRTAVRPGKPHL-TPLLIFNGIGANLELVFP-FIQALDPDLEVIAFDVPGVGGSSTPNRP 74

Query: 99  VTIDEMARDVIAVIGKLGFSTVDLMGFSLGGFVAQDIALKTPDLVRKLILTGTGPAGGAG 158
                +A+    ++  L +  V+++G S GG +AQ  A   P+  +KL+L  T       
Sbjct: 75  YRFPGLAKLTARMLDYLDYGQVNVIGVSWGGALAQQFAHDYPERCKKLVLAATA------ 128

Query: 159 IERVGAVSWPLILKGILTLRDPKTY------LFFTSTTNGRRAAKDFLARLKERKMGRDK 212
               GAV  P   K +  +  P+ Y      +       G    +D           R  
Sbjct: 129 ---AGAVMVPGKPKVLWMMASPRRYVQPSHVIRIAPLIYGGSFRRDPSLAASHAAKVRSA 185

Query: 213 GATPYAFLRQLAAIKAWGRQAPQDLGRIHIPVLVANGDNDIMVPTSNSRDIARRIPNAEL 272
           G   Y +  QL A   W   +   L +IH P LV  GD+D ++P  N R +A RIPNA+L
Sbjct: 186 GKLGYYW--QLFAGLGW--TSIHWLHKIHQPTLVLAGDDDPLIPLINMRMLAWRIPNAQL 241

Query: 273 VIYEDAGHGGIFQYHAEFVPKALAFL 298
            I +D GH  +        P  + FL
Sbjct: 242 HIIDD-GHLFLITRAEAVAPIIMKFL 266