Pairwise Alignments

Query, 443 a.a., ABC transporter substrate binding protein (sugar) from Agrobacterium fabrum C58

Subject, 435 a.a., extracellular solute-binding protein family 1 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 74.3 bits (181), Expect = 7e-18
 Identities = 82/344 (23%), Positives = 148/344 (43%), Gaps = 28/344 (8%)

Query: 59  IKDMTSEFTKKTGIKVRVEILNEDPIRARLSTLMQARSSDVDAFISLKIREGAVYNKAGW 118
           ++ +T +FT KTG  V    L E+ +R R++T + A+    D  +++ + E  ++   GW
Sbjct: 39  MQGLTQDFTDKTGHTVEWVTLEENVLRQRVTTDIAAKGGSFD-IMTIGMYETPIWGANGW 97

Query: 119 YADLNPLLKDASLTSPDFNFEDFGEGLRKNEIFDGKLTGVPINVEGPLFYWRKDIFAKC- 177
              L+ L       S D+N +D    +R     DG L   P   E  +  +RKD+  K  
Sbjct: 98  LVPLDDL-------SADYNADDILPAMRAGLSHDGTLYAAPFYGESSMIMYRKDLMEKAG 150

Query: 178 -NVPEPQYLEDIPAAAKTISECDKSVNAWTARGVRNAIPYPMASFVFNLGGDFKSA---D 233
             +P+    + I  AA  +++ +  +N    RG   A      +F+      F +    +
Sbjct: 151 LEMPDAPTWQFIREAAAAMTDRENDINGICLRG--KAGWGEGGAFITVTANSFGARWFDE 208

Query: 234 KTKPGLCQDKTIAGLQMYGDLLKTYGAVGASNHSFPQVVELLGQGKVAMTHESSNEFSNI 293
                  Q +    L+ +  ++   G  G + + F + + L  QGK  M  +++   S +
Sbjct: 209 DWNAQFDQPEWKEALEFFVGMMNESGPNGYATNGFNENLNLFQQGKCGMWIDATVAASFV 268

Query: 294 VK-FPGRAEDLAIKVLPPGKESGISKPV--AFGWGLSMSNFSKRKEATWLFMQWATSPE- 349
                    D     L P  E GI K     + W L++   +++ +A   F++WATS + 
Sbjct: 269 TNPNDSTVADQVGFALAPNSE-GIEKRANWLWAWALAIPAGTQKADAAKEFIEWATSTDY 327

Query: 350 IEARLIQAGVA--PP--RSSVFDGADMKKFTDELPIRKSWADAI 389
           IE      G A  PP  R+S+++  + K    ++P  K   D+I
Sbjct: 328 IELVAANEGWANVPPGARTSLYENENYK----DIPFAKMTLDSI 367