Pairwise Alignments

Query, 466 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 803 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 95.5 bits (236), Expect = 6e-24
 Identities = 96/365 (26%), Positives = 159/365 (43%), Gaps = 40/365 (10%)

Query: 125 FTIDVTDTVQLRRQLARKEQEMRQILEALPAAVYTTDAQGKITYYNRAATELSGREPV-V 183
           F  D+T     + +L R+++  R++LEAL  AV   DA G +T +N  A +  G +   V
Sbjct: 428 FVTDITVRKAEQLELERQQEMNRRLLEALSEAVIACDADGCLTLFNEKAKQWHGTDVAPV 487

Query: 184 GQDEWCVTYRLFTPDG-QPLPHDQCPMAIALREKRAVRGVEAIAQRPDGTMVPFLPFPTP 242
             DEW   Y+L+ PDG  PL  ++ P+  AL  +        +  + +   V  L    P
Sbjct: 488 PPDEWPTRYQLYHPDGVTPLRPEEIPLLRALHGEHVCDHEMVLLGQGEPRHV--LSNADP 545

Query: 243 MFDEDGELIGAINMLVDISDRKTAETNQKVFLDELNHRVKNNMAMLYGLINSAARESRSD 302
           ++  DG+ +GA+ +L DI++RK  E  Q+ F+  ++H ++  +  + G +         +
Sbjct: 546 LYTSDGQPMGAVAVLHDITERKRIERLQREFISTVSHELRTPLTSITGALGLICSNVMGE 605

Query: 303 --EARRVLGDAAQRVGAMAAAQQTLYMEKDRTRVNAREF------LQ-----AVCSSARL 349
             EA   L D AQ+      A     ++ D+       F      LQ     A+ S+   
Sbjct: 606 VPEAMHELLDIAQQNSQRLNALIDDLLDMDKLHAGKMRFALLRQPLQPQLELALRSNRNY 665

Query: 350 AFSKEVALHIDVDAVQLPNDVTMPLALVLNELLTNAAKHGCDDAGKCDVWITLSHHDGEF 409
           A    V L +            M L  VL+ LL+NAAK     AG+  V ++ +  DG  
Sbjct: 666 AEQHGVVLQLGACPAVTVEIDAMRLQQVLSNLLSNAAKF--SPAGE-QVELSATLSDGRV 722

Query: 410 VLTVRDSGSGYNFE--------------ATGKRSSGTGLVSGLVRQL------RGSFSVA 449
            ++VRD G G + +              +  ++  GTGL   + ++L      +  F   
Sbjct: 723 RISVRDRGPGISADFRERVFQKFAQADSSDSRQQGGTGLGLAISKELIERMGGQIGFESE 782

Query: 450 PGPGA 454
           PG GA
Sbjct: 783 PGHGA 787