Pairwise Alignments

Query, 466 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 1353 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score = 84.3 bits (207), Expect = 2e-20
 Identities = 114/503 (22%), Positives = 191/503 (37%), Gaps = 100/503 (19%)

Query: 36  LVGE--DGTILRANRAELDLLGFTAEEYIGRPISQFHADSDTIRE---ILARLSGGEKLN 90
           ++GE  DG I+  NRA   + G+   E +GRP++      + + E   +L R++ GE+  
Sbjct: 359 IIGEALDGRIITWNRAAEQMFGYDEHEVLGRPLAPLLVPPELVHEDEQLLERVARGERGP 418

Query: 91  RFPARLRAKDGSIRYVEITSS-VQFRDGKFLNTRCFTIDVTD-----------TVQLRRQ 138
               R   K+G +  V IT S ++  DG  L       D+TD             QL +Q
Sbjct: 419 TLETRRLHKNGQLIDVTITCSFIRETDGTLLGAAKMMHDITDRKRVERYLMEFNAQLEQQ 478

Query: 139 LARKEQEMRQILEAL--------PAAVYTTDAQGKITYYNRAATEL---SGREPVVGQDE 187
           ++ +  E+ ++   L          ++  TD QG+I  +NR A  L   S  E + G   
Sbjct: 479 VSERTAELSRVAGLLQGVLDASSEVSIIATDTQGQIFVFNRGAELLLGYSNSEMLSGNG- 537

Query: 188 WCVTYRLFTPDGQPLPHDQCPMAIALREK--RAVRGVEAIAQ---------------RPD 230
                    P    LP +    +  L  +    + G++                   R D
Sbjct: 538 ---------PGVFHLPEEVAARSAELSREYGTLIEGIDVFCYKASREGSETRQWTYVRKD 588

Query: 231 GTMVPFLPFPTPMFDEDGELIGAINMLVDISDR--------------KTAETNQKVFLDE 276
           GT VP L   TP+   DGELIG + +  DI++R              + A   + +FL  
Sbjct: 589 GTTVPVLMIITPIRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANAAKSLFLAN 648

Query: 277 LNHRVKNNMAMLYGLINSAARESRSDEARRVLGD----AAQRVGAMAAAQQTLYMEKDRT 332
           ++H ++  M  + G+ +     + +D+ R++L          +G +        +E    
Sbjct: 649 MSHEIRTPMNAVIGISHLLHNTALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEM 708

Query: 333 RVNAREF----LQAVCSSARLAFSKEVALHIDVDAVQLPNDVTMPLALVLNELLTNAAKH 388
           R+    F    L           ++E  L   V+ V       +  AL +N++L N   +
Sbjct: 709 RLEHNPFSPRQLLDELGELFTPQAQEKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGN 768

Query: 389 GCDDAGKCDVWITLSHHDGE-----FVLTVRDSGSGYNFEATG--------------KRS 429
                    V +T+S  D          +V+D+G G   +  G              +R 
Sbjct: 769 ALKFTSVGGVDVTVSREDDHADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRF 828

Query: 430 SGTGL----VSGLVRQLRGSFSV 448
            GTGL    V GL  Q+ G   V
Sbjct: 829 GGTGLGLSVVRGLAEQMGGRIGV 851



 Score = 41.2 bits (95), Expect = 2e-07
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 134 QLRRQLARKEQEMRQILEALPAAVYTTDAQGKITYYNRAATELSGREPVVGQDEWCVTYR 193
           Q ++Q+   +  +  I+E    A+      G+I  +NRAA      E + G DE  V  R
Sbjct: 336 QRKQQVVAGQARLATIVENSSDAIIGEALDGRIITWNRAA------EQMFGYDEHEVLGR 389

Query: 194 LFTPDGQP--LPHDQCPMAIALREKRAVRG--VEAIAQRPDGTMVPFLPFPTPMFDEDGE 249
              P   P  L H+     +  R  R  RG  +E      +G ++      + + + DG 
Sbjct: 390 PLAPLLVPPELVHED--EQLLERVARGERGPTLETRRLHKNGQLIDVTITCSFIRETDGT 447

Query: 250 LIGAINMLVDISDRKTAETNQKVFLDELNHRVKNNMAML 288
           L+GA  M+ DI+DRK  E     F  +L  +V    A L
Sbjct: 448 LLGAAKMMHDITDRKRVERYLMEFNAQLEQQVSERTAEL 486