Pairwise Alignments

Query, 466 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 455 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score = 85.5 bits (210), Expect = 3e-21
 Identities = 86/364 (23%), Positives = 159/364 (43%), Gaps = 39/364 (10%)

Query: 40  DGTILRANRAELDLLGFTAEEYIGR------PISQFHADSDTIREILARLSGGEKLNRFP 93
           +G +   N A   + G+TA+E IG       P  + H + D    IL R+  GE + +F 
Sbjct: 32  EGNVQSWNPAAEQIFGWTADEMIGNSIRVLIPPDRQHEEDD----ILQRIRTGEMVPKFE 87

Query: 94  ARLRAKDGSIRYVEIT-SSVQFRDGKFLNTRCFTIDVTDTVQLRRQLARKEQEMRQILEA 152
                K G   +V +T S ++  DG+ +       D+T+TV++RR+L   E + R +  +
Sbjct: 88  TERLHKSGRRIHVAVTVSPLRDPDGRIVGASKIAHDITETVEIRRRLVASEHQFRSLANS 147

Query: 153 LPAAVYTTDAQGKITYYNRAATELSGR--EPVVGQDEWCVTYRLFTPD-----GQPLPHD 205
           +P   +  ++ G + +YN    + +G   E + G   W     L  PD        L H 
Sbjct: 148 IPQLAWIAESDGTVFWYNDRWFDYTGTTLEQLRGSG-WTA---LHHPDHLERVRSKLQH- 202

Query: 206 QCPMAIALREKRAVRGVEAIAQRPDGTMVPFLPFPTPMFDEDGELIGAINMLVDISDRKT 265
                 A  +   +RG        DG    FL    P+ D+ GE+        DI+ ++ 
Sbjct: 203 SWDTGEAWEDTFPLRG-------KDGEYRWFLSRAMPLRDDSGEVWRWFGTNTDITVQRQ 255

Query: 266 AETNQKVFLDELNHRVKNNMAMLYGLINSAARESRSDEARRVLGDAAQRVGAMAAAQQTL 325
            E   ++ + E+NHR KN +A++  ++   A  S ++     LG   Q +    +  Q L
Sbjct: 256 HEQQIQMLMGEINHRAKNMLAVVQAMVMRTADRSFAES----LGARLQAL----SRNQDL 307

Query: 326 YMEKDRTRVNAREFLQAVCSSARLAFSKEVALHIDVDAVQLPNDVTMPLALVLNELLTNA 385
            ++++ +     E +++  ++        V +  + + +  P   +  + L ++EL TNA
Sbjct: 308 LIKRNWSGTPIGELIESQLAAVNDLIGTRVLIEGERELLLSP-VASETIGLAIHELTTNA 366

Query: 386 AKHG 389
            K+G
Sbjct: 367 TKYG 370



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 156 AVYTTDAQGKITYYNRAATELSG--REPVVGQDEWCVTYRLFTPDGQPLPHDQCPMAIAL 213
           A+ + D +G +  +N AA ++ G   + ++G         L  PD Q   H++  +   +
Sbjct: 25  AIVSKDVEGNVQSWNPAAEQIFGWTADEMIGNS----IRVLIPPDRQ---HEEDDILQRI 77

Query: 214 REKRAVRGVEAIAQRPDGTMVPFLPFPTPMFDEDGELIGAINMLVDISDRKTAETNQKVF 273
           R    V   E       G  +      +P+ D DG ++GA  +  DI++  T E  +++ 
Sbjct: 78  RTGEMVPKFETERLHKSGRRIHVAVTVSPLRDPDGRIVGASKIAHDITE--TVEIRRRLV 135

Query: 274 LDELNHR 280
             E   R
Sbjct: 136 ASEHQFR 142