Pairwise Alignments

Query, 535 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  285 bits (729), Expect = 3e-81
 Identities = 177/525 (33%), Positives = 276/525 (52%), Gaps = 17/525 (3%)

Query: 2   LLKIDNLKVEAKGEEGWSPILHGINLEVRRGEVVGLIGESGAGKSTLGLAALGFAHAG-L 60
           +LKIDNL V         P+  G++L + RGE + L+GESG+GKS    A L     G  
Sbjct: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64

Query: 61  RFAGGRVLVENVDLLRLTERERSAYRGRRVAYVAQSAAASFNPAWQLLDQFCEGPAIHGT 120
            +  G +   +VD LR +ER     RG R+  + Q    S NP  ++  Q  E  AIH  
Sbjct: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124

Query: 121 ASRPDCEILARQLYASMQLPDAANFGLRFPHQVSGGQLQRAMVAMAMACKPDLIVFDEPT 180
                 E  A +    + +         +PH++SGG+ QR M+AMA+  +P+L++ DEPT
Sbjct: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184

Query: 181 TALDVTTQIGVLTAIRSAVETSETAAIYITHDLAVVAQMADRIKVMRHGREVEEAPTRQI 240
           TALDV+ Q  +L  ++S  +    A ++ITHDL++V ++ADR+ VM+ G+ VE      +
Sbjct: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244

Query: 241 MQSPREDYTRSLWAVREFHRPERRLERNDAPV------------ISINNVTASYGHFDVL 288
             +P   YT+ L  +    R        DAP             I       +  +   +
Sbjct: 245 FAAPAHPYTQQL--INADPRGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAV 302

Query: 289 RDVAFEIPRGATVAVVGESGSGKSTAARVVTGLLPPRIGSITLNGEVLPPSFSRRSREQL 348
            D++F + +G ++ +VGESGSGKST    +  LL  + G+I   G+ L     R      
Sbjct: 303 TDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQ-GAIRFAGQDLQALKRREMLPYR 361

Query: 349 RKIQMIYQMADTALNPRQSIRQILCRPLQFYVGLKGAALERRLGELMEQIELSPRQFLHR 408
            K+Q+++Q   +ALNPR S+ Q++   L+ +  L    ++  +  +M+++ L      HR
Sbjct: 362 SKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDV-DTRHR 420

Query: 409 VPGELSGGQKQRIGIARALAANPEIIICDEVTSALDQLVAEGILRLLSRLQDETGISYMF 468
            P E SGGQ+QRI IARAL   PE I+ DE TS+LD+ V   +L LL  LQ +  ++Y+F
Sbjct: 421 YPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLF 480

Query: 469 ITHDIDTVRAIADDVVVMKSGTVQDKGSKAEVMDPPRHHYTRQLL 513
           I+HD+  +RA+    +VMK+G + + G    + + P H YT+QL+
Sbjct: 481 ISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525



 Score =  147 bits (372), Expect = 7e-40
 Identities = 101/262 (38%), Positives = 146/262 (55%), Gaps = 13/262 (4%)

Query: 272 VISINNVTASYGHFD----VLRDVAFEIPRGATVAVVGESGSGKSTAARVVTGLLPPRI- 326
           V+ I+N++  +G       V   V+  I RG T+A+VGESGSGKS  A  +  LLP    
Sbjct: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64

Query: 327 ----GSITLNGEVLPPSFSRRSREQLR--KIQMIYQMADTALNPRQSIRQILCRPLQFYV 380
               GSI   G+V     S R+   +R  +I MI+Q    +LNP   I + L   L  + 
Sbjct: 65  HYLSGSIHF-GDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHR 123

Query: 381 GLKGAALERRLGELMEQIELS-PRQFLHRVPGELSGGQKQRIGIARALAANPEIIICDEV 439
           GL+  A E++  E + ++ +  P   ++  P ELSGG++QR+ IA AL   PE++I DE 
Sbjct: 124 GLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEP 183

Query: 440 TSALDQLVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSKAE 499
           T+ALD  V   IL LL  LQ E G++ +FITHD+  VR IAD V VM+SG + +  +   
Sbjct: 184 TTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHT 243

Query: 500 VMDPPRHHYTRQLLASVPQMDP 521
           +   P H YT+QL+ + P+  P
Sbjct: 244 LFAAPAHPYTQQLINADPRGVP 265