Pairwise Alignments

Query, 535 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  322 bits (824), Expect = 3e-92
 Identities = 192/561 (34%), Positives = 297/561 (52%), Gaps = 47/561 (8%)

Query: 2   LLKIDNLKVEAKGEEGWSPILHGINLEVRRGEVVGLIGESGAGKSTLGLAALGFAHAGLR 61
           LL++ NL++E     G    +  + L+++RGE+VG++GESGAGKST+G A +        
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62

Query: 62  FAGGRVLVENVDLLRLTERERSAYRGRRVAYVAQSAAASFNPAWQLLDQFCEGPAIHGTA 121
            AGG V +    +  L+ +     RG ++ ++ Q    S NP + +  Q  E    +   
Sbjct: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122

Query: 122 SRPDCEILARQLYASMQLPDAANFGLRFPHQVSGGQLQRAMVAMAMACKPDLIVFDEPTT 181
           S  +    A  L   + +P   N   ++PHQ SGG  QR ++A+A+A +PDLI+ DEPTT
Sbjct: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182

Query: 182 ALDVTTQIGVLTAIRSAVETSETAAIYITHDLAVVAQMADRIKVMRHGREVEEAPTRQIM 241
           ALDV+ Q  +L  IR   + +    + +THD+ VV+ + DR+ VM  G  VE  PT +++
Sbjct: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242

Query: 242 QSPREDYTRSLWAVREFHRPERRLER-------------------------------NDA 270
            +P   YTRSL  +    R +R+L+R                                  
Sbjct: 243 GTPEHPYTRSL--ISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTG 300

Query: 271 PVISINNVTASYGHFDVL-----------RDVAFEIPRGATVAVVGESGSGKSTAARVVT 319
           P++ + NV   +   D L            +V+F +  G T  +VGESGSGKST ARV+ 
Sbjct: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360

Query: 320 GLLPPRIGSITLNGEVLPPSFSRRSREQLRK-IQMIYQMADTALNPRQSIRQILCRPLQF 378
           GL  P  G +T  G  L    S   R  LR+ +QM++Q   T++NPR  I  I+  P++F
Sbjct: 361 GLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRF 420

Query: 379 YVGLKGAALERRL-GELMEQIELSPRQFLHRVPGELSGGQKQRIGIARALAANPEIIICD 437
           +   +  +  R++  +L+E + L     L + P E SGGQ+QRI IARALA  P ++ICD
Sbjct: 421 HKLTRSESETRQIVNDLLEHVGLGKMAGL-KYPHEFSGGQRQRISIARALATRPRLLICD 479

Query: 438 EVTSALDQLVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSK 497
           E TSALD  V   IL LL  LQDE  ++ +FI+HD+  +R + D V VM+ GT+ +    
Sbjct: 480 EPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPT 539

Query: 498 AEVMDPPRHHYTRQLLASVPQ 518
            ++   P+H Y+++L++ +P+
Sbjct: 540 EQLFTDPQHEYSKKLISLMPE 560



 Score =  140 bits (353), Expect = 1e-37
 Identities = 89/259 (34%), Positives = 136/259 (52%), Gaps = 10/259 (3%)

Query: 272 VISINNVTASY----GHFDVLRDVAFEIPRGATVAVVGESGSGKSTAARVVTGLLPP--- 324
           ++ + N+   Y    G    ++ +  +I RG  V VVGESG+GKST    V  LL P   
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62

Query: 325 -RIGSITLNGEVLPPSFSRRSRE-QLRKIQMIYQMADTALNPRQSIRQILCRPLQFYVGL 382
              G + LNGE +     +  RE +  KI  I+Q   T+LNP  ++   L   +   + +
Sbjct: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122

Query: 383 KGAALERRLGELMEQIEL-SPRQFLHRVPGELSGGQKQRIGIARALAANPEIIICDEVTS 441
                 +R   LM+Q+ +  P   L + P + SGG +QR+ IA ALA  P++II DE T+
Sbjct: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182

Query: 442 ALDQLVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSKAEVM 501
           ALD  + + IL L+  L  +  +  M +THD+  V  + D V VM  G + + G  A+V+
Sbjct: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242

Query: 502 DPPRHHYTRQLLASVPQMD 520
             P H YTR L+++VP+ D
Sbjct: 243 GTPEHPYTRSLISAVPRSD 261