Pairwise Alignments

Query, 502 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 509 a.a., tripartite tricarboxylate transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  405 bits (1041), Expect = e-117
 Identities = 213/487 (43%), Positives = 309/487 (63%), Gaps = 8/487 (1%)

Query: 4   VDLLMLGFSEALTPTNLGFCLLGALLGTLIGVLPGIGPTATIAVLLPITFYLPPLAGLIM 63
           +D ++ G + A+ PTNL   ++G  +GT IG+LPG+GP + IA+++PIT+ L P +GLI+
Sbjct: 2   LDGILQGLATAVMPTNLMMVMIGCFVGTFIGMLPGLGPISAIALMIPITYGLEPASGLIL 61

Query: 64  LSGIYYGAQYGGSTTAILVNLPGEASSVVTAVDGYKMAQQGRAGSALAVAALGSFFAGTV 123
           ++G+YYGA +GGST++IL+N PG +S+VVTA DGY MAQ+G+AG ALA+AA  SF  GT+
Sbjct: 62  MAGVYYGAIFGGSTSSILINAPGCSSTVVTAFDGYPMAQKGQAGKALALAAYASFTGGTL 121

Query: 124 ATFGIAIAGPTLSSFALSFGPAEYVSLMLFGLLAATILA-RGSVLKAIGMILLGLLLGMV 182
           +   +  A P L+  +LSF  ++Y +LML GL A    A +G V+KA  M +LGL+L  V
Sbjct: 122 SAIMLLFAAPALAKVSLSFQSSDYFALMLVGLSAVAAFAGKGQVIKAWMMTVLGLMLSTV 181

Query: 183 GIDASSGEERLTFNAVELFDGIDFVVIAIGLFGFSEIVENL-----ENVEARGVLVSKLS 237
           GID   G ER TF   +L DG  F+++A+  F   E +  +     +N       +  + 
Sbjct: 182 GIDKGIGVERFTFGLTDLMDGFSFLLLAMATFALGETLMGILKPDADNSANEQEQMKNIG 241

Query: 238 RLWPTREDFRRAWPAVLRGTGVGTFLGVLPGGGATLASFCAYSVEKKVSKRPN--EFGEG 295
            +  T+E+ + A P  LR + +G F GVLPG GAT+A+F AY +E+ ++ +    EFG+G
Sbjct: 242 SMKLTKEEVKEAAPVSLRSSILGFFTGVLPGAGATIAAFLAYGMERNLAPKAKKEEFGQG 301

Query: 296 AVEGVAGPEAANNAGAQSSFIPLLTLGIPSNNMMAMMLSAFIIHGITPGPTVLATQPEIF 355
           ++ G+  PE+ANNA +  SF+PLLTLGIP +   A+ML A I +GI PGP +    P+IF
Sbjct: 302 SLRGLVAPESANNAASSGSFVPLLTLGIPGSGTTAIMLGALIAYGIQPGPRLFVDHPDIF 361

Query: 356 WGLVASMWIGNLMLVVINLPLIGVWVKLLTVPYRLLYPAILLFCCVGVYSINNRIFDVAL 415
           W ++ SM++GN++L+++NLPLI    KLL VP  +L P IL F   GVY ++    DV +
Sbjct: 362 WSVIISMYVGNIVLLILNLPLIPYISKLLAVPRTVLLPMILFFSITGVYLVSFNTMDVYV 421

Query: 416 AAGFGLLGYAFRKAKCEPGPLLLGFVLGPLLETNIRRALTISHGNPSVFVERPISLVLLI 475
                +   A R A     PLLLGF+LG L+E N+RRAL I+ G  S   ERPI+L   +
Sbjct: 422 MILVAMGAIALRLANFPLAPLLLGFILGGLMEENLRRALIITDGEISFLWERPITLAFTV 481

Query: 476 ATTGVLL 482
                LL
Sbjct: 482 LAIVTLL 488