Pairwise Alignments

Query, 324 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  251 bits (642), Expect = 2e-71
 Identities = 121/270 (44%), Positives = 183/270 (67%)

Query: 3   AMLEIKGLKTEVVTDEGNITLIDDITLSLAAGEVMGLVGESGSGKSVTGLSIMGLLDKPV 62
           ++LE+K L+ E  +  G    +  +TL +  GE++G+VGESG+GKS  G +++ LL  P 
Sbjct: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61

Query: 63  QMTGGKILFKGRDLRSASQKELRSIRGNRIAMIFQDPMSTLNPVLRIDTQMMEVVHAHEN 122
            + GG++   G  +   S + +R +RG++I  IFQDPM++LNP+  ++ Q+ E +HA+  
Sbjct: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121

Query: 123 VSKQVARERARDALGMVGIPSPEERLSAYPHQFSGGMRQRVAIAIALLMSPDVIIADEPT 182
           VS + A +RA   +  VGIP PE RL  YPHQFSGGMRQRV IAIAL   PD+IIADEPT
Sbjct: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181

Query: 183 TALDVTIQAQILSIVQKLAREKGTALIWVTHDLSVVAGLAEKLSVMYAGRIVEQGLTADL 242
           TALDV+IQ QIL+++++L ++     + VTHD+ VV+ + ++++VMY G +VE G TA +
Sbjct: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241

Query: 243 LRRPLHPYTNGLIASLPAHNKRGERLRQIS 272
           L  P HPYT  LI+++P  +++ +R   +S
Sbjct: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVS 271



 Score =  152 bits (383), Expect = 3e-41
 Identities = 85/236 (36%), Positives = 138/236 (58%), Gaps = 7/236 (2%)

Query: 25  DDITLSLAAGEVMGLVGESGSGKSVTGLSIMGLLDKPVQMTGGKILFKGRDLRSASQKEL 84
           ++++ ++  GE  GLVGESGSGKS     I GL     Q   G++ F+G DL +   +  
Sbjct: 330 NNVSFAVHEGETFGLVGESGSGKSTIARVIAGLY----QPNAGRVTFEGIDLTALKSEHE 385

Query: 85  RSIRGNRIAMIFQDPMSTLNPVLRIDTQMMEVVHAHENV-SKQVARERARDALGMVGIPS 143
           R     ++ M+FQ+P +++NP ++I   + E +  H+   S+   R+   D L  VG+  
Sbjct: 386 RRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGK 445

Query: 144 PEERLSAYPHQFSGGMRQRVAIAIALLMSPDVIIADEPTTALDVTIQAQILSIVQKLARE 203
                  YPH+FSGG RQR++IA AL   P ++I DEPT+ALDV++QAQIL++++ L  E
Sbjct: 446 MAGL--KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDE 503

Query: 204 KGTALIWVTHDLSVVAGLAEKLSVMYAGRIVEQGLTADLLRRPLHPYTNGLIASLP 259
               +++++HDL V+  + +++ VM  G ++E   T  L   P H Y+  LI+ +P
Sbjct: 504 LNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMP 559