Pairwise Alignments

Query, 295 a.a., ABC transporter membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  264 bits (674), Expect = 2e-75
 Identities = 133/290 (45%), Positives = 187/290 (64%), Gaps = 10/290 (3%)

Query: 12  FMRQFARSPLAVMGLALIFLIVLMAVFAPYLSPQNPYDLMQLDIMDGRMAPGTESSTGFT 71
           F+  F R  +A+   A+  L V++A+ AP ++P NPYDL  +DIMD  + P         
Sbjct: 19  FLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEH 78

Query: 72  FLFGSDDQGRDMLSAILYGLRISLIVGLGSAALAFIIGTAFGLTAAYVGGRVETAMMRLV 131
           FL G+D+QGRD+ S ILYG R+SL +G  +  L   +G   GL+A Y GGR+++ +MR  
Sbjct: 79  FLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFA 138

Query: 132 DLQLSFPTILSALLILALLGKSVGN-------VVFAIVLV---EWATYARTARGAALTEL 181
           D+QLSF T++ A+++ A+   S G        VV  +V++   EW  YART R + L E 
Sbjct: 139 DIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEK 198

Query: 182 RREYVEAARSLRLPHRNILFRQLLPNCLSPLVVLLTMQVARAITLEATLSFLGLGVPVTE 241
           ++EYVEAAR +      I+FR +LPNCLSP++V+ T+QVA AI  EA LSFLGLG+PV +
Sbjct: 199 KKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQ 258

Query: 242 PSLGLLISSGYEFILSGTYWIALFPGIALLVTIFAINLVGDRLRQLVDPK 291
           PSLG LIS G+ +I SG +WI  FPGI L++ +  INL+GD LR + +PK
Sbjct: 259 PSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308