Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 526 a.a., putative binding-protein-dependent transport protein (periplasmic) from Acidovorax sp. GW101-3H11

 Score =  211 bits (538), Expect = 4e-59
 Identities = 163/523 (31%), Positives = 247/523 (47%), Gaps = 29/523 (5%)

Query: 7   LLLTSLIGLVAQPVMAKNLTIGLSGTV--TSIDPHFYNASPNNAIAMQIFDRLTERTAEG 64
           LLL + I   A P+ A++ T   S +V  ++ D H  N   NN +   ++D L E  ++ 
Sbjct: 6   LLLAAAIA-AALPLAAQSATFRWSRSVDISTWDIHTQNVGVNNTMHGAVYDTLVEYNSKT 64

Query: 65  RLVE-GLATKWDTVSETKWRFALRDGVKWHDGKPFTSDDVIFTLDRAGSVPNSPGGFGGF 123
              E  LAT+W  +  T+ R  LR GVK+ DG  FT+DD  F+L+RA +  ++   F  +
Sbjct: 65  FKPEPSLATEWKLIKPTQLRLTLRKGVKFSDGSEFTADDAKFSLERAKAKTSN---FAVY 121

Query: 124 MRNIASVEADGDNAVIISTKAPAPTLPGDLANIAIVSRHAGEGADTADYNSGKA------ 177
            + I  VE      + I +  P P L   L  + I+S+   E   + +    K       
Sbjct: 122 TQGIDRVEKIDAYTIDIHSDLPNPVLVNQLTELRILSKAWAEKNKSVEPKDIKTKDETFA 181

Query: 178 ---AIGTGAFRLTTFKQGIEVGLERNPDWWGKKVAWDHAT---YRMISSASARTTAALAG 231
              A+GTG ++L  +     V LE NP WWGK     + T   Y  I + + RT A L+G
Sbjct: 182 HRNALGTGPYQLKQWTPDQRVVLEPNPHWWGKGKYPTNLTEIVYTPIKADATRTAALLSG 241

Query: 232 DVDVIDAPAATDIARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFVKGPKGEALDNNP 291
           +VD +  P+  D+AR K T  L  +  P  R I+L      D        P  +    NP
Sbjct: 242 EVDFVIDPSLQDLARIKQTPTLQVLEGPEYRTIFLGLDQFRDEL------PGSDVKGKNP 295

Query: 292 LADPRVRNALSEAINREGIVDKIMEGTATASGQWLPKGAFSYTPDIQPPKP-DAAGAKKL 350
           L D RVR AL +AI+ + I   ++ G A  +G  +      +T       P D   A+KL
Sbjct: 296 LKDLRVRKALYQAIDIQSIQRVVLRGLAQPTGTLIANQVNGWTKKADVRYPYDPKAAQKL 355

Query: 351 LADAGYPDGFQLTVHVPNDRYPNAPAVVQAVAQMWTRIGVKTNVEALPWTTF--SSRKSE 408
           LADAGYP+GF++       RY N   + QA+   W ++GVK  + +LP+ T+    +++E
Sbjct: 356 LADAGYPNGFEVDFACSAGRYINDEQLCQAITAHWAKVGVKAKLRSLPFATYFPMIQRNE 415

Query: 409 FAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMMIYDDKA 468
            ++ LLG G  T+DA   L +++ T     G G  N   +S+P +D LV +     D   
Sbjct: 416 ASIYLLGWGVPTFDAFYSLQSLVRTTG-AGGDGNFNLGRFSDPQIDALVERVKKETDTTT 474

Query: 469 REAALIEAVKVAITDGAIIPLYQQSNAWVLRKGLNYAPRIDER 511
           R   + +A+       + IPLY Q   W   K +    R D R
Sbjct: 475 RNQLIEQALIKEHELVSHIPLYNQVIPWAGTKKVEIIHRADNR 517