Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  122 bits (307), Expect = 3e-32
 Identities = 118/524 (22%), Positives = 206/524 (39%), Gaps = 54/524 (10%)

Query: 23  KNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTERTAEGRLVEGLATKWDTVSETKW 82
           + L  G    V S+DPH     P + +   + + L  + A G +V G+A  W+T     +
Sbjct: 40  QELVRGNGTEVASLDPHKTEGVPESNVIRDLLEGLVNQDANGNVVPGVAESWETTDNKTF 99

Query: 83  RFALRDGVKWHDGKPFTSDDVIFTLDRAGSVPNSPGGFGGFM-----------------R 125
            F +R   KW +G P T+ D +++  RA   P +   +  +M                 +
Sbjct: 100 TFHIRKDAKWSNGDPVTAHDFVYSFQRAVD-PATASPYSWYMEYTKMKNAKEIIAGEKDK 158

Query: 126 NIASVEADGDNAVIISTKAPAPTLPGDLANIAIVSRHAGEGADTAD-YNSGKAAIGTGAF 184
           +    +A  D+ ++   +   P     + +  +   H        D +   +  +G GA+
Sbjct: 159 STLGAKAVDDHTLVFELETAVPYFVMMMGHTTVKPIHKATVEKFGDQWTKPENFVGNGAY 218

Query: 185 RLTTFKQGIEVGLERNPDWW-GKKVAWDHATYRMISSASARTTAALAGDVDVIDAPAATD 243
            L  +     + L+RNP +W  K    +  TY  I +  A     L+G++ + +      
Sbjct: 219 VLDKWVVNERLELKRNPQYWDDKNTVLNKVTYLPIENQVAEMNRFLSGEIQITNELPLEH 278

Query: 244 IARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFVKGPKGEALDNNPLADPRVRNALSE 303
             R K     S      L   Y   +          K P        P  D RVR ALS 
Sbjct: 279 FKRLKKEHPESVQVQGQLCTYYYGFNN---------KKP--------PFDDVRVRKALSY 321

Query: 304 AINREGIVDKIMEGTATASGQWLPKGAFSYTPDI-----QPPKPDAAGAKKLLADAGYPD 358
           AI+R+ + D I+      +    P+    ++P++        K   A AKKLL +AGY  
Sbjct: 322 AIDRDVVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKMTQKERIAEAKKLLEEAGYNK 381

Query: 359 GFQLTVHVPNDRYPNAPAVVQAVAQMW-TRIGVKTNVEALPWTTF--SSRKSEFAMKLLG 415
              L   +  +   N   +  A+  MW T +GV   +E   W T+  + R+  F +   G
Sbjct: 382 SNPLKFTLLYNTSENHKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAG 441

Query: 416 LGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMMIYDDKAREAALIE 475
                 +ASS L  +L +         +ND  Y +   D ++ KA     ++ R+    +
Sbjct: 442 WCGDYNEASSFLTLMLSS-------NTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLYAD 494

Query: 476 AVKVAITDGAIIPLYQQSNAWVLRKGLNYAP--RIDERTLAKDV 517
           A K+   D  I P+YQ   + ++   +   P    +++  AKD+
Sbjct: 495 AEKLLARDMPIAPIYQYVRSRLVSPTVGGYPSNNAEDKIYAKDL 538