Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  218 bits (554), Expect = 6e-61
 Identities = 156/508 (30%), Positives = 233/508 (45%), Gaps = 44/508 (8%)

Query: 21  MAKNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTERTAEGRLVEGLATKWDTVSET 80
           MA ++T+       S+DPH   +     ++  +FD L   T +      LA  W  V   
Sbjct: 22  MAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRFTQKMEFEPRLAESWQRVDNE 81

Query: 81  KWRFALRDGVKWHDGKPFTSDDVIFTLDRAGSVPNSPGGFGGFMRNIASVEADGDNAVII 140
             RF LR GVK+H G  FT+DDV++T +R          F G    + S+    D  + I
Sbjct: 82  TMRFTLRKGVKFHSGNDFTADDVVWTFNRL----KESADFKGIFEPLVSLTKVDDYTIEI 137

Query: 141 STKAPAPTLPGDLANIAIVSRHAGEGADTADYNSGKAAI-------------GTGAFRLT 187
            T    P +      I  +      G  TAD    KA I             GTG F +T
Sbjct: 138 KTAGTYPLIENVATYIFPMDSKFYTGT-TAD-GKNKAEIVKHGNSFASENISGTGPFTVT 195

Query: 188 TFKQGIEVGLERNPDWWGK--KVAWDHATYRMISSASARTTAALAGDVDVIDAPAATDIA 245
             +QG+++  +RNP++W K  K   D  T  +I   + R  A L+G VD+I   +  D  
Sbjct: 196 AREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQ 255

Query: 246 RFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFVKGPKGEALDNNPLADPRVRNALSEAI 305
           R K    +   + PG RVI    + +                 N  L D RVR A+  AI
Sbjct: 256 RIKDAKGVDLFTMPGTRVITFQMNQN----------------SNPALKDVRVRQAIVYAI 299

Query: 306 NREGIVDKIMEGTATASGQWLPKGAFSYTPDIQPPKPDAAGAKKLLADAGYPDGFQLTVH 365
           N EGIVDK+M+G AT + Q  P G   Y  +++ P+ D   AK+L+ +AGY  GF LT+ 
Sbjct: 300 NNEGIVDKVMKGAATTAAQQSPVGYAGYNENLK-PRFDLNKAKELMKEAGYEKGFNLTMI 358

Query: 366 VPNDRYPNAPAVVQAVAQMWTRIGVKTNVEALP----WTTFSSRKSEFAMKLLGLGNATY 421
            PN+RY N   + QA + M ++IG+K +++ +P    W  F   K    M ++G    T 
Sbjct: 359 APNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFD--KCAADMLMIGWHPDTE 416

Query: 422 DASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMMIYDDKAREAALIEAVKVAI 481
           D+++    +  T D   G G  N   YSN  +D LV+ A    D + R   L +  ++  
Sbjct: 417 DSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILY 476

Query: 482 TDGAIIPLYQQSNAWVLRKGLNYAPRID 509
            + A +PL+ Q  +W  +  L+ AP I+
Sbjct: 477 NEAAFVPLHFQDPSWAAKNTLDIAPIIN 504