Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 497 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

 Score =  211 bits (538), Expect = 4e-59
 Identities = 160/509 (31%), Positives = 227/509 (44%), Gaps = 37/509 (7%)

Query: 9   LTSLIGLVAQPVMAKNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTERTAEGRLVE 68
           L  LI L      A  L I    + T++DP F   S    +   +FD L  R A  +L  
Sbjct: 11  LALLISLTTPAAFASELVIAQPASATAMDPGFLKESAT--LVDNLFDTLVLRDANMQLQP 68

Query: 69  GLATKWDTVSETKWRFALRDGVKWHDGKPFTSDDVIFTLDRAGSVPNSPGGFGGFMRNIA 128
           GLAT W +  +T W F LR GVK+ DG+P  +  V F++DR     N       ++R I 
Sbjct: 69  GLATSWKSPDDTTWEFTLRQGVKFSDGEPVNAQAVKFSIDRILDPANHAPTI-SYIRTIK 127

Query: 129 SVEADGDNAVIISTKAPAPTLPGDLANIAIVSRHAGEGADTADYNSGKAAIGTGAFRLTT 188
           SVE  GD  V I T  P P LP  ++                     +  +G+GA+ LT 
Sbjct: 128 SVEVTGDYQVKIHTTGPDPLLPTRMSRYPTYIVPPAYVTKVGAAEFARKPVGSGAYTLTA 187

Query: 189 FKQGIEVGLERNPDWWGKKVAWDHATYRMISSASARTTAALAGDVDVIDAPAATDIARFK 248
           F    +V ++ NP +W  K A D  T+R I  A+ R TA L G+V ++D   A  +   K
Sbjct: 188 FIPDEKVVMQANPGYWRGKPAIDTVTWRPIPEATGRITALLTGEVQLVDGVPADLVPALK 247

Query: 249 TT--ANLSFVSTPGLRVIYLAPSTSGDAWKAFVKGPKGEALDNNPLADPRVRNALSEAIN 306
                +L  V   GL  IYL                 G   D  PL D RVR ALS A+N
Sbjct: 248 NKPGVHLEQVKNGGL-TIYL-----------------GLKNDQKPLNDVRVRQALSLALN 289

Query: 307 REGIVDKIMEGTATASGQWLPKGAFSYTPDIQPPKPDAAGAKKLLADAGYPDGFQLTVHV 366
           R      ++ G  T +G       F Y   I  P  D A AK LLA+AGYP GF L    
Sbjct: 290 RTAYTRDLLHGFGTPTGTMAGPKDFGYEA-IPAPAQDIAKAKALLAEAGYPQGFTLRFQA 348

Query: 367 PNDRYPNAPAVVQAVAQMWTRIGVKTNVEALPWTTFSSR---KSEFAMKLLGLGNA-TYD 422
           P  RY  +  V QA+ Q    IGVK  +E   W+ ++ +   + +  M +L  G+  T D
Sbjct: 349 PR-RYIASADVAQAIVQDLAAIGVKAQLEVPEWSVYTQQVAAQKQAPMYMLAWGSTQTLD 407

Query: 423 ASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMMIYDDKAREAALIEAVKVAIT 482
           A + L  +L + +P         S  ++P LD L++ +    D   RE  L +  +V  +
Sbjct: 408 ADAALYPILHSGEPY--------STVNSPELDALLNSSRTTVDPAKREKILQQIQQVVAS 459

Query: 483 DGAIIPLYQQSNAWVLRKGLNYAPRIDER 511
              +IPLY++ + +     + +  R D R
Sbjct: 460 QQPLIPLYKEDSLYASADNVTFTGRADSR 488