Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 535 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

 Score =  154 bits (390), Expect = 6e-42
 Identities = 140/521 (26%), Positives = 223/521 (42%), Gaps = 67/521 (12%)

Query: 3   KTGVLLLT-SLIGL-VAQPVMAKNLTIGLSGTVTSIDPHFYNASPN-NAIAMQIFDRLTE 59
           K+G+L  +  LI L VA  V AK L     G+    +P  + +    +A ++ I++RL E
Sbjct: 7   KSGLLKFSMGLIALTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVE 66

Query: 60  -RTAEGRLVEGLATKWDTVSETK-WRFALRDGVKWHDGKPF------TSDDVIFTLDR-- 109
            +     +  GLA KWD  ++ K + F LR GVKW D K F       +DDV+++ +R  
Sbjct: 67  FKIGTTEIQPGLAEKWDVSADGKTYTFHLRKGVKWQDNKEFKPTRDFNADDVVYSFERQL 126

Query: 110 ----------AGSVPNSPG-GFGGFMRNIASVEADGDNAVIISTKAPAPTLPGDLANIAI 158
                      GS     G G G  +  I  V+   DN V      P      DLA +  
Sbjct: 127 DKNNPYHGVSGGSYEYFEGMGMGDLINKIVKVD---DNTVQFVLNRPESPFLADLA-MDF 182

Query: 159 VSRHAGEGADTADYNSGKAA---------IGTGAFRLTTFKQGIEVGLERNPDWWGKKVA 209
            S  + E AD    N  KA          IGTG F+L  +++   +  +  P +WG K  
Sbjct: 183 ASILSAEYAD----NMLKAKTPEKVDLDPIGTGPFQLLQYQKDSRILYKAFPGYWGTKPQ 238

Query: 210 WDHATYRMISSASARTTAALAGDVDVIDAPAATDIARFKTTANLSFVSTPGLRVIYLAPS 269
            D   + +   AS R       +  V+  P   DIA  K   +++ +  PGL V YL+ +
Sbjct: 239 IDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIAAMKKDKSINLMQQPGLNVGYLSFN 298

Query: 270 TSGDAWKAFVKGPKGEALDNNPLADPRVRNALSEAINREGIVDKIMEGTATASGQWLPKG 329
                            ++  PL + +VR AL+ A+N++ I+D + +G    +   +P  
Sbjct: 299 -----------------VEKKPLDEVKVRQALTMAVNKKAIIDAVYQGAGQPAKNLIPPT 341

Query: 330 AFSYTPDIQPPKPDAAGAKKLLADAGYPDGFQL---TVHVPNDRYPNAPAVVQAVAQMWT 386
            + Y  D+   + +   AK+LL +AG+ DGF +    + V     PNA  + + +   W 
Sbjct: 342 MWGYNKDVVDYEYNPEKAKELLKEAGHADGFAIDLWAMPVQRPYNPNARRMAEMIQADWA 401

Query: 387 RIGVKTNVEALPWTTFSSR--KSEFAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAAN 444
           +IGVK N+    W  +  R    E    ++G      D  +    +      K G   +N
Sbjct: 402 KIGVKANIVTYEWGEYLKRAKNGEHQSVMMGWTGDNGDPDNFFATLFSCAAAKDG---SN 458

Query: 445 DSGYSNPALDDLVSKAMMIYDDKAREAALIEAVKVAITDGA 485
            S +     +DL+  A     D A+ AAL +  +V + D A
Sbjct: 459 YSRWCYKPFEDLIQPA-RAESDHAKRAALYQQAQVVMHDQA 498