Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 519 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

 Score =  343 bits (880), Expect = 9e-99
 Identities = 204/511 (39%), Positives = 279/511 (54%), Gaps = 12/511 (2%)

Query: 7   LLLTSLIGLVA-QPVMAKNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTERTAEGR 65
           +L ++L  L A Q V A +L IGL+ + TS+DP FY    N+A+A  IFD L  +  +  
Sbjct: 9   VLSSALATLFALQTVQAADLNIGLAASTTSMDPQFYVGGANSAMARNIFDGLVNQDEKQL 68

Query: 66  LVEGLATKWDTVSETKWRFALRDGVKWHDGKPFTSDDVIFTLDRAG-SVPNSPGGFGGFM 124
           +   LA  W  +++T W FALR GVK+HDG  FT+ DVI ++ R   +  NSP  +  ++
Sbjct: 69  ITPALAVSWKVINDTTWEFALRPGVKFHDGSDFTAKDVIASVKRVALASKNSPSAYTPYV 128

Query: 125 RNIASVEADGDNAVIISTKAPAPTLPGDLANIAIVSRHAGEGADTADYNSGKAAIGTGAF 184
            +IA V       V I TKAP P L  +L+ +AI+     E   +   N GK  IGTG F
Sbjct: 129 NDIADVTEVNPLTVRIVTKAPTPLLLNNLSRVAILPARL-ETVGSQTLNEGKDVIGTGPF 187

Query: 185 RLTTFKQGIEVGLERNPDWWGKKVAWDHATYRMISSASARTTAALAGDVDVIDAPAATDI 244
           +  ++     V L RN  +WG K  WD+ T R+  + SAR  A  +GDVD+I++    D 
Sbjct: 188 KFVSWTPDDNVVLARNDQYWGGKAQWDNVTLRVFKNPSARVAAMRSGDVDMIESVPTADG 247

Query: 245 ARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFVKGPKGEALDNNPLADPRVRNALSEA 304
                 A+L   S  G R++YL P    D    F KGP G    +NPL    VR A+S A
Sbjct: 248 RDLGKQASLHLESVAGNRILYLHPDQDRDV-SPFAKGPDG----SNPLKKREVREAMSLA 302

Query: 305 INREGIVDKIMEGTATASGQWLPKGAFSYTPDIQPPKPDAAGAKKLLADAGYPDGFQLTV 364
           INR+ IVD+IM+G    + Q +PKG F YTP I  P  D   AK+LLA AGYPDGF LT 
Sbjct: 303 INRQAIVDRIMDGQGVPASQLVPKGYFGYTPSIAAPVYDPVKAKQLLAQAGYPDGFTLTF 362

Query: 365 HVPNDRYPNAPAVVQAVAQMWTRIGVKTNVEALPWTTFSSR--KSEFAMKLLGLGNATYD 422
           H  NDRYPN   + QA+ QM++R+G+KT+V  +P + + SR  K +F++ + G    T +
Sbjct: 363 HASNDRYPNDSKIAQALGQMFSRVGIKTDVVTMPGSVYFSRASKRDFSLIMGGAAIETGE 422

Query: 423 ASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMMIYDDKAREAALIEAVKVAIT 482
           AS +L  +L T  P  G G  N   YSNP  D  + +A    DD  RE  L  A ++A+ 
Sbjct: 423 ASGVLGPLLETFGPNGGQG--NRGRYSNPEFDKTLLQARETLDDGQREKLLQHATEIAMK 480

Query: 483 DGAIIPLYQQSNAWVLRKGLNYAPRIDERTL 513
           D   IPL   S  W ++    Y  R D  TL
Sbjct: 481 DEGTIPLLFLSYTWAMKTPYTYVGRSDGYTL 511