Pairwise Alignments

Query, 345 a.a., glycine betaine transporter periplasmic subunit from Agrobacterium fabrum C58

Subject, 336 a.a., ABC transporter substrate-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 81/346 (23%), Positives = 141/346 (40%), Gaps = 59/346 (17%)

Query: 15  IVAASLPVLSSASAAELPGDGKTIRFA----QSDSLGANYVVAKIVTKGFEALGYKVKLS 70
           ++ + LPV    SAA  P     I FA    +S SL  + ++  IV KG+   G +    
Sbjct: 16  VLVSPLPV----SAATAP-----IHFADLNWESGSLITD-ILRVIVEKGY---GLQTDTL 62

Query: 71  TVNTTLFFQAVAQGDLDIATDINFPQREPGFRKVADKADMIG-----KGLIEGGGINGYL 125
              T     A+A  D+ +  +  +  R P + K   +  ++      KG  EG  +  Y+
Sbjct: 63  PGTTITLETALANNDIQVIGE-EWAGRSPVWVKAEAEGKVVALGDTVKGATEGWWVPEYV 121

Query: 126 IDKKTAD-----AYNIKTLDQM-------KDPKIAALFGTDGKADLINCDPGWSCGDVVE 173
           I    A      A ++++++ +       KDP+      +  K   +N   GW+   V +
Sbjct: 122 IKGDPAKGIKPLAPDLRSVEDLARYKHVFKDPE------SPDKGRFLNSPIGWTSEVVNK 175

Query: 174 YQLDKFGLKDTVKSVR-GKYEALMVEAVARAKRGEPVFFYAWSPSWMNKALQPGKDVVWL 232
            +L  +GL D+  + R G   AL  E  +  +RG+P+ FY WSP+     L   K V   
Sbjct: 176 QKLKAYGLSDSYVNFRSGSGAALDAEISSTIRRGKPILFYYWSPT---PLLGRFKLVQLQ 232

Query: 233 PTPFDALPPSVPSSGTNAVANVEGCAGAANPCRMAMAAWNWTAVGNKEFLKENPEVKSFV 292
             PFDA      +   N   N +     A+   + ++A          F K+ PE+  F 
Sbjct: 233 EPPFDAEAWKTLTDADN--PNPKPTRSLASKLSIGVSA---------PFQKQYPEIAEFF 281

Query: 293 ENMSFPLSTWSSWEQAISQKGGSDATVRGLSDAWLSENKALLDGWI 338
             +  P+   +     +S+K       R  ++A+L  +  +   W+
Sbjct: 282 SKVDLPIEPLNKTLADMSEK---RTPPREAAEAFLKAHPEVWQAWL 324