Pairwise Alignments

Query, 345 a.a., glycine betaine transporter periplasmic subunit from Agrobacterium fabrum C58

Subject, 322 a.a., Substrate-binding region of ABC-type glycine betaine transport system from Pseudomonas syringae pv. syringae B728a

 Score = 65.1 bits (157), Expect = 2e-15
 Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 40/233 (17%)

Query: 11  LASTIVAASLPVLSSASAAELPG---DGKTIRFAQSDSLGANYVVAKIVTKGFEAL---G 64
           L +T+V+A L  L+SA A++  G    GK ++FA     G N+  A ++T   + +   G
Sbjct: 7   LLTTLVSAGL--LASAGASQAAGWCESGKPVKFA-----GLNWESAMLLTDVLQVILDKG 59

Query: 65  YKVKLSTV--NTTLFFQAVAQGDLDIATDINFPQREPGFRKVADKADMIGK--------- 113
           Y   +  +  N+     A+   D+ I     F +   G  +V +KA   GK         
Sbjct: 60  YGCTVDALPGNSIAMENALGTNDIQI-----FAEEWVGRSEVWNKAAAAGKVVGVGAPIV 114

Query: 114 GLIEGGGINGYLID-----KKTADAYNIKTLDQMKDPKIAALFGTD---GKADLINCDPG 165
           G +EG  +  Y+I+     K  A A N+K++  +   + +A+F      GK    NC  G
Sbjct: 115 GAVEGWYVPRYVIEGDAKRKLEAKAPNLKSISDLA--QYSAVFKDQEEPGKGRFYNCPAG 172

Query: 166 WSCGDVVEYQLDKFGLKDTVKSVR-GKYEALMVEAVARAKRGEPVFFYAWSPS 217
           W+C       L  +GL+    + R G   AL    ++  KRGEP+  Y WSP+
Sbjct: 173 WTCELENSEMLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPT 225