Pairwise Alignments

Query, 345 a.a., glycine betaine transporter periplasmic subunit from Agrobacterium fabrum C58

Subject, 315 a.a., Substrate-binding region of ABC-type glycine betaine transport system from Pseudomonas syringae pv. syringae B728a

 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 82/342 (23%), Positives = 135/342 (39%), Gaps = 55/342 (16%)

Query: 13  STIVAASLPVLSSASAAELPGDGKTIRFAQSDSLGANYVVAKIVTKG-FEALGYKVKLST 71
           S ++AA+L +   A AAE P    T+ F  SD    +  V   VT    E+LGYK K + 
Sbjct: 6   SLLLAATLCMPVLAQAAE-PEACHTVNF--SDVGWTDITVTTAVTSAVLESLGYKTKTTM 62

Query: 72  VNTTLFFQAVAQG-DLDIATDINFPQREPGFRKVADKADMIGKGLIEGGGINGYLIDKKT 130
           ++  + ++++A G ++D+      P  E   +   +       G +E   +   L + K 
Sbjct: 63  ISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYRE------AGTVE--TVRANLENAKY 114

Query: 131 ADAYNIKTLDQ-MKDPKIAALFGTDGKADLINCDPGWSCGDVVEYQLDK--FGLKDTVKS 187
             A      D+ + D    A F  +    +   +PG     +++  +DK  FGLKD    
Sbjct: 115 TLAVPEALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFK 174

Query: 188 VRGKYEALMVEAVARA-KRGEPVFFYAWSPSWMNKALQPGKDVVWLPTPFDALPPSVPSS 246
           V    EA M+  V RA KR   V F  W P  MN   +    + +L    D   P+   +
Sbjct: 175 VVESSEAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFK----MKYLTGGDDFFGPNYGQA 230

Query: 247 G--TNAVANVEGCAGAANPCRMAMAAWNWTAVGNKEFLKENPEVKSFVENMSFPLSTWSS 304
              TN                             K + +E   V   ++N+SF L+  S+
Sbjct: 231 TIYTNT---------------------------RKGYSQECSNVGQLLKNLSFTLNMEST 263

Query: 305 -WEQAISQKGGSDATVRGLSDAWLSENKALLDGWITAAKSAN 345
                +  K   DA  +    AW+ +N  +LD W+    + +
Sbjct: 264 LMGNVLDDKMKPDAAAK----AWIKKNPQVLDTWLAGVNTVD 301