Pairwise Alignments

Query, 345 a.a., glycine betaine transporter periplasmic subunit from Agrobacterium fabrum C58

Subject, 337 a.a., Substrate-binding region of ABC-type glycine betaine transport system from Pseudomonas syringae pv. syringae B728a

 Score = 67.8 bits (164), Expect = 4e-16
 Identities = 92/354 (25%), Positives = 151/354 (42%), Gaps = 56/354 (15%)

Query: 10  LLASTIVAASLPVLSSASAAELPGDGKTIRFA----QSDSLGANYVVAKIVTKGFEALGY 65
           LL  +++A  L +  +A+AAE     K I+F     +S SL    V+  IV KG+   GY
Sbjct: 7   LLGCSLLALGL-LGQTATAAE---KAKPIQFGALTWESGSL-ITEVLRTIVEKGY---GY 58

Query: 66  KVKLSTVNTTLFFQAVAQGDLDIATDINFPQREPGFRKVADKADMIGKGLIEGGGINGYL 125
                  +T     A+A+ D+ +  +  +  R P + K  ++  ++G G I  G   G+ 
Sbjct: 59  PTDTLPGSTVSLETALAKNDIQVIAE-EWTGRSPVWVKAEEEGKVLGLGNIVKGATEGWW 117

Query: 126 IDK---KTADAYNIKTL--------------DQMKDPKIAALFGTDGKADLINCDPGWSC 168
           + +   K   A  IK L              D  KDP+      +  K   +N   GW+ 
Sbjct: 118 VPEYVIKGDAAKGIKPLAPDLKSVADLARYKDVFKDPE------SPDKGRFLNSPSGWTS 171

Query: 169 GDVVEYQLDKFGLKDTVKSVR-GKYEALMVEAVARAKRGEPVFFYAWSPSWMNKALQPGK 227
             V   +L  +GL D+  + R G   AL  E  +  +RG+PV FY WSP+     L    
Sbjct: 172 EIVNTQKLKAYGLADSFVNFRTGSGAALDAEVASAIRRGKPVLFYYWSPT----PLLGKY 227

Query: 228 DVVWLPTP-FDALPPSVPSSGTNAVANVEGCAGAANPCRMAMAAWNWTAVGNKEFLKENP 286
            ++ L  P FDA      +  +N   N  G +  A    + ++A         EF K+ P
Sbjct: 228 KLIKLDEPAFDAEAWKTLTDASN--PNPRGTSSLAATLSIGVSA---------EFSKQYP 276

Query: 287 EVKSFVENMSFPLSTWSSWEQAISQKGGSDATVRGLSDAWLSENKALLDGWITA 340
           E+ S  + + FP+   +     +S K   DA V  ++  +L ++  +   W+ A
Sbjct: 277 ELVSVFKGVDFPIDLLNKTLGEMSDK-HEDAKV--VAARFLKQHPEVWKAWLPA 327