Pairwise Alignments

Query, 397 a.a., efflux protein from Agrobacterium fabrum C58

Subject, 377 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 97.8 bits (242), Expect = 5e-25
 Identities = 95/386 (24%), Positives = 170/386 (44%), Gaps = 37/386 (9%)

Query: 8   KRFILAAATLVGLL---GVWLLFLRPPAKLELVTAQARTGDIEEVVLATGVLEPLELVRV 64
           KR+ L A TLVG+    G + L   P +   L T     G IE+  +A G + P   V +
Sbjct: 3   KRWTLLA-TLVGVGLAGGYYTLTYTPESSSPLPTLNVSRGTIEKQAVAVGQIMPSHSVAI 61

Query: 65  GAQASGRVERLSVEVGDVVEAGQLVAEIDSQTRRNTLRDREAALANIRAVHAARMAGLVK 124
            +Q +G V  + V  G  VE GQ + ++        L D    L    A           
Sbjct: 62  KSQINGIVGEIYVREGQHVEQGQPLIKVRPNPTPQALTDASTELMQSEA----------N 111

Query: 125 ARKDFER--ERELLAGGSIPRAQYDAAVATLDSARAEVQALDAQITQAQVALA---SADI 179
              D +R    E L    I  A YD  V     A+A+V+A  A++ Q +  L    S + 
Sbjct: 112 LESDLQRLANLERLVKQQIIPANYDDYVR----AKADVKAKQAEVQQKRQNLELIRSGEA 167

Query: 180 ELGYTRIT----APIAGTVVAIVTEEGQTV---NALQTAPTIVMIARLDRMKVRADISEA 232
            +G  +++    API+GT++ I  E G+ +    + Q A  ++ +A +  +  +  +SE 
Sbjct: 168 SIGQAKLSSTLYAPISGTILNIKVEVGEPIISTESSQAATEMIQLADMKNIVFKGSVSEH 227

Query: 233 DVVRVRRGMPVWFSILGDPKRRFDGELRQVEPAPASIANDGSSAARELGSTKGAVYYTGL 292
           D  ++  GMP   ++   P++  +G+L +V      + N  +   +   +  G     G 
Sbjct: 228 DAAQLNAGMPASITVAPYPEQVINGQLTKVAIQSERLNNPENKDGKSFDN--GFQVEIGQ 285

Query: 293 IDVANADGVLRPSMTAQVSIVLSRVSGAVLAPLSAVEGAPRAGDTARIRVLDAASE-VQI 351
           +D+   +  LR   +A   I L R +  +  P  A++     G+T  + + D +++    
Sbjct: 286 LDIPE-NMTLRSGFSASAKITLQRAADVITLPERALQ---FEGETPMVLIADGSAQGYTA 341

Query: 352 RQVQVGVDNGADIQILSGLQAGETIV 377
             V++G+ +G  ++IL G+   ++IV
Sbjct: 342 HPVKLGLSDGVQVEILEGVAEKDSIV 367