Pairwise Alignments

Query, 397 a.a., efflux protein from Agrobacterium fabrum C58

Subject, 386 a.a., membrane fusion protein of a type I secretion system from Klebsiella michiganensis M5al

 Score =  245 bits (625), Expect = 2e-69
 Identities = 142/373 (38%), Positives = 223/373 (59%), Gaps = 3/373 (0%)

Query: 7   RKRFILAAATLVGLLGVWLLFLRPPAKLELVTAQA-RTGDIEEVVLATGVLEPLELVRVG 65
           RK ++LA   ++  +         PA+ E + A A   GDIE+VVLA+G+++P   V VG
Sbjct: 9   RKAWLLALVAILATIAAVFYQRSLPAQAESLYAVALERGDIEKVVLASGIIKPAVQVSVG 68

Query: 66  AQASGRVERLSVEVGDVVEAGQLVAEIDSQTRRNTLRDREAALANIRAVHAARMAGLVKA 125
           AQ SG++ +L V  G+ V  GQL+AEID   + + LR+  A LA+ RA   A  A LV+ 
Sbjct: 69  AQVSGQLRKLYVRQGERVRKGQLLAEIDPTLQLSDLRNATAQLASARAQKLASEATLVQY 128

Query: 126 RKDFERERELLAGGSIPRAQYDAAVATLDSARAEVQALDAQITQAQVALASADIELGYTR 185
           RK   RER +   GS   +  + A A   +   ++   +AQI QA++++ +A+  LGYTR
Sbjct: 129 RKALARERAMNRDGSGVSSDLEQAQAQYAAQVQQIAVNEAQIVQAEMSVQTANANLGYTR 188

Query: 186 ITAPIAGTVVAIVTEEGQTVNALQTAPTIVMIARLDRMKVRADISEADVVRVRRGMPVWF 245
           I AP+ G V+ IVT EGQT+ + Q APTI+++A LD+M+V+  ISEAD+ ++  G P+WF
Sbjct: 189 ILAPMDGEVLGIVTREGQTIVSSQIAPTILVLADLDKMQVQTRISEADIQKIHPGQPLWF 248

Query: 246 SILGDPKRRFDGELRQVEPAPASIANDGSSAARELGSTKGAVYYTGLIDVANADGVLRPS 305
            ++ DP+ R++GEL  V+PAP     + ++ A        A+YY G  +V N   +L+ S
Sbjct: 249 YVIADPQTRYEGELGYVQPAPQEALEEQNAGASAGNQQSSAIYYNGTFEVDNRQRLLKTS 308

Query: 306 MTAQVSIVLSRVSGAVLAPLSAVEGAPRAGDTARIRVLDAASEVQIRQVQVGVDNGADIQ 365
           MTAQV I +++V   +  P++A+      GD   I ++  AS  + R V++G+++    Q
Sbjct: 309 MTAQVFIRIAQVKDVLRVPVAAL--GRSLGDERYIVMVQTASGSEERTVRIGINDRQYAQ 366

Query: 366 ILSGLQAGETIVL 378
           +L GL+ GE +V+
Sbjct: 367 VLEGLRPGERVVI 379