Pairwise Alignments

Query, 285 a.a., ABC transporter membrane spanning protein (mannopine) from Agrobacterium fabrum C58

Subject, 271 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  116 bits (290), Expect = 6e-31
 Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 9/237 (3%)

Query: 43  VFLILPTFLVVPMSLNDGSYLAFPPQGLTLKWYRAYFSDPDWMSATLFSLQVAFATAIVA 102
           +FL  P  ++V  S N+ S L     G + KWY   F D   + A   SL++AF ++ +A
Sbjct: 16  LFLYAPMLILVIYSFNE-SKLVTVWGGFSPKWYGELFKDQQILDAVWTSLRIAFYSSTMA 74

Query: 103 TTIGTTAALALAKSRLPFKGL-LQSLALGPMIVPHVVLGVSLYLVFSP------WRVTGT 155
             IGT AA  + + +  +  L L ++   P+++P V+ G+SL L+F        W     
Sbjct: 75  VIIGTMAAFVMTRFKRSWAKLTLSNMITAPLVMPEVITGLSLLLLFVHMADLLGWPKERG 134

Query: 156 FAGFVLAHTVLAIPYVMIVVGAAVQKFDPSLELAALNCGANRFQSFFLVMLPNIGPSVAA 215
                +AH+     YV +VV + +++ D S+E AA++ GA   ++FFL+ +P I P++ A
Sbjct: 135 MVTVWIAHSTFCAAYVAVVVSSRLRELDRSIEEAAMDLGATPLKTFFLITVPMISPALVA 194

Query: 216 ASVFAFLASFDDATVSFFISDIGGKSIGRKMFEDIDFNLTPVI-AAASTVLVAISLV 271
             + +F  S DD  +S F S  G  ++   +F  +   ++P I A A+ +++ +SL+
Sbjct: 195 GWLLSFSLSLDDLVISSFASGPGATTLPMVVFSSVRLGVSPKINALATLIILCVSLI 251