Pairwise Alignments

Query, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  342 bits (876), Expect = 1e-97
 Identities = 278/1061 (26%), Positives = 478/1061 (45%), Gaps = 71/1061 (6%)

Query: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRLV 62
            +  L++ + FS + G S    L +   A+G+ A+ + D  +L G+V+    +    ++ +
Sbjct: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65

Query: 63   VGCRLDLTDG------MSLLVYPTDRAAYSRLTRLITLGKSRG--------GKNNCILHW 108
            +G    L           L +   +   Y  LT LI+    RG         K   + H 
Sbjct: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125

Query: 109  DDVIAYSRGMIGVLVPDLPDATCAAQLRRIAEA----FGDRAYVSLCLRRRQNDQMRLHE 164
            + +I  S G  G +   L       Q+ R  E     F D  Y+ L    R +++  LH 
Sbjct: 126  EGLIVLSGGKSGEVGRALLKGN-QQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHF 184

Query: 165  ISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERERHADRYLKPPE 224
              ++A ++ +  V TN+V+F      +  +I   I    T++D    +     +YL+   
Sbjct: 185  ALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEA 244

Query: 225  EMERLFSRYSEALARTLEIVRRCKFSLEELTYQYP---------EEAIVPGKDAQASLEH 275
            EM  LF+   EALA ++EI +RC  ++    Y  P         E+ +V    ++  LE 
Sbjct: 245  EMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLV--MKSREGLEE 302

Query: 276  YVWECAPDRYPEGLPQ---DVLKTVRHELDLIRTMKYAPYFLTVFSIVRFARSQGI-LCQ 331
             +    PD  PE   +   +  + ++ ELD+I  M +  YFL V   +++++   I +  
Sbjct: 303  RLEFLFPD--PEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360

Query: 332  GRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYK 391
            GRGS A S V Y L IT +DP   DLLFERF++ ER   PD DVDF  ++R++VI  + +
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420

Query: 392  TYTKDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSS------GMWSWSEEVPDRN 445
             Y +D  +   T     AK  IRDVG+ LG P   +  +S       GM      + +  
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480

Query: 446  IRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPATMKDRQI 505
            ++E  L   D  +   +   + L G  R+ G+H GG V++   + D  PI      +  +
Sbjct: 481  LQE--LYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538

Query: 506  IEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLI----REHKGQQLDLSNIEQEDAATYA 561
             ++DK+DVE    +K D L L  LT +  A  L+    ++     + +  I  +DA ++ 
Sbjct: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598

Query: 562  MIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGK 621
             ++ A T   FQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  ++ R+ G+
Sbjct: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658

Query: 622  EPVEYPTPE-----LEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFT 676
            E + YP  +     L+ +L  T G+ L+QE  M++A V +G+T G AD LR++M   K  
Sbjct: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKP 717

Query: 677  GGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCH 736
              +++ +     G  KNG   E A K F  +E F  YGF +SH+A++AL++Y + ++K H
Sbjct: 718  EEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH 777

Query: 737  YPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSDRHAVR 796
            YP  F AA++ +          +V +    G+ V P  +N       L R    D  A+ 
Sbjct: 778  YPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSG-----LYRFNVDDNGAIV 832

Query: 797  LGFRQVKGLAVADAARIVAARMNN-------PFASVDDMWRRSSVPTEALVQLAEADAFL 849
             G   +KG+       I+ AR           F +  D+ + +    E L+     D   
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 850  PSLKLERRDALWAIKALRDEPLPLFAAAAEREATAIAEQQEPEVALRQMTDGHNVIE--- 906
            P           A++A            A+         +E E    Q+ +    +    
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEG 952

Query: 907  DYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPGSAKG-- 964
            +    GL L  HPV    ++L+        EA   R  + +  AGLV+  +   + +G  
Sbjct: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012

Query: 965  VMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRI 1005
            +  +T++D +G   ++++    ++    +    ++ ++G++
Sbjct: 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQV 1053