Pairwise Alignments

Query, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 870 a.a., DNA polymerase III subunit alpha from Synechococcus elongatus PCC 7942

 Score =  291 bits (746), Expect = 1e-82
 Identities = 222/769 (28%), Positives = 373/769 (48%), Gaps = 68/769 (8%)

Query: 1   MSYAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRAT-DI 59
           MS+  L + + +S L GAS   +L   AK LG+ AI + D   + G +  L+  +   +I
Sbjct: 1   MSFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNI 60

Query: 60  RLVVGCRLDLTDG-----------MSLLVYPTDRAAYSRLTRLITLGKSRGGKNNCI--- 105
           R ++G  + + +               +V   ++  Y  L +L ++   +G K   I   
Sbjct: 61  RPIIGNEMYVINSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHLQGFKGRGIFAR 120

Query: 106 --LHWDDVIAYSRGMI---GVLVPDLPDATCAAQ---LRRIA----EAFGDRAYVSLCLR 153
             +  + +  Y  G+I     L  ++P A   ++    RR+A    E FG+  Y+ +   
Sbjct: 121 PCIDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYLEIQDH 180

Query: 154 RRQNDQMRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213
               D++   EI  +A    ++ V TND  F      +  D + CI+    +  V  +R 
Sbjct: 181 GSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLV--VEDKRL 238

Query: 214 RHAD-RYLKPPEEMERLFSRY------SEALARTLEIVRRC---------KFSLEELTYQ 257
           R++   YLK  EEM +LF  +      ++A+A TL I  +          K     +   
Sbjct: 239 RYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPVPDG 298

Query: 258 YPEEAIVPGKDAQASLEHYVWECAPDRYPEGLPQDVLKTVRHELDLIRTMKYAPYFLTVF 317
           Y EE  +     Q   E     C  DRY E   +     + +E+ ++  M +A YFL V+
Sbjct: 299 YNEETYMAEVARQGLAERL--NC--DRY-EDCEEAYRDRLEYEIKMMHEMGFASYFLVVW 353

Query: 318 SIVRFARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVD 376
             ++FAR   I +  GRGSAA S V Y +GIT+IDP  + LLFERF++ ER   PDID D
Sbjct: 354 DYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPDIDTD 413

Query: 377 FEHERREEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKALGLP----EDVIKALSS 432
           F  ++R++VI ++ K Y +D+ A   T  R  +K  ++DV + L +P    + + K +  
Sbjct: 414 FCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLIPV 473

Query: 433 GMWS-------WSEEVPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLT 485
                       S++ P    +E      D R+   + +A ++ G  +  G H  G V++
Sbjct: 474 ARGKPAKLKVMISDQTPAPEFKEKY--EKDARVKHWVDMALRIEGTNKTFGVHAAGVVIS 531

Query: 486 HDRLDDLVPIEPATMKDRQII-EWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKG 544
              LD++VP++     D Q+I ++  +D+EA   +K+D L L  LT + KA DL++E  G
Sbjct: 532 AVPLDEIVPLQ--RNNDGQVITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQETSG 589

Query: 545 QQLDLSNIEQEDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPG 604
           Q +D   +  +D  TY ++ K D  G FQ+ES     ++  LKP    D+   +A+ RPG
Sbjct: 590 QAIDPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRPG 649

Query: 605 PIQGDMVHPYLRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEAD 664
           P+   ++  ++ R+ G+E ++Y    L+ +L +T G+ ++QE  M++A    G+T GEAD
Sbjct: 650 PLDAGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYTLGEAD 709

Query: 665 QLRKSMATFKFTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSY 713
            LR++M   K +  V + +   V G  KNG + + A + F Q+  F  Y
Sbjct: 710 LLRRAMGKKKMSEMV-KHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757