Pairwise Alignments

Query, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

 Score = 1798 bits (4658), Expect = 0.0
 Identities = 893/1087 (82%), Positives = 971/1087 (89%), Gaps = 2/1087 (0%)

Query: 1    MSYAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIR 60
            M YAELQVTTHFSFLR ASSA+ELF TA+ +GI+A+GVVDRNSLAGIVRALEASRAT +R
Sbjct: 1    MRYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLR 60

Query: 61   LVVGCRLDLTDGMSLLVYPTDRAAYSRLTRLITLGKSRGGKNNCILHWDDVIAYSRGMIG 120
            LVVGCRLDL DGMS+LVYPTDRAAYSRLTRL+TLGK RGGK NCI+H+DDV  Y+ G+IG
Sbjct: 61   LVVGCRLDLQDGMSILVYPTDRAAYSRLTRLLTLGKGRGGKANCIIHFDDVALYAEGLIG 120

Query: 121  VLVPDLPDATCAAQLRRIAEAFGDRAYVSLCLRRRQNDQMRLHEISNLAARFKVKTVVTN 180
            +LVPDL D  CA QLR+IAE FGDRAYVSLCLRRR NDQ++LHE++NLA + +VKT+VTN
Sbjct: 121  ILVPDLADEVCAVQLRKIAEVFGDRAYVSLCLRRRPNDQLQLHELTNLAVKHRVKTIVTN 180

Query: 181  DVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERERHADRYLKPPEEMERLFSRYSEALART 240
            DVLFHE GRRQLQD+VTCIR   TIDDVGFERERHADRYLKPPEEM RLF  Y EALART
Sbjct: 181  DVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADRYLKPPEEMARLFPAYPEALART 240

Query: 241  LEIVRRCKFSLEELTYQYPEEAIVPGKDAQASLEHYVWECAPDRYPEGLPQDVLKTVRHE 300
            +EIV RC+FSLEEL YQYPEEA++ G  AQ SL+HY WE    RYPEGLP  V KT+RHE
Sbjct: 241  MEIVERCRFSLEELVYQYPEEALILGMTAQQSLQHYTWEGVRARYPEGLPTHVEKTIRHE 300

Query: 301  LDLIRTMKYAPYFLTVFSIVRFARSQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFE 360
            L LI TMKYAPYFLTVFSIVR+ARSQGILCQGRGSAANSAVCY+LGITSIDP TNDLLFE
Sbjct: 301  LALIETMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYVLGITSIDPETNDLLFE 360

Query: 361  RFVSQERDEPPDIDVDFEHERREEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKAL 420
            RFVSQERDEPPDIDVDFEHERREEVIQWIYKTY  DKAALC+TVTRYRAKGAIRDVGKAL
Sbjct: 361  RFVSQERDEPPDIDVDFEHERREEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKAL 420

Query: 421  GLPEDVIKALSSGMWSWSEEVPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPG 480
             LPED+I+ LSSG+WSWSE V +R +REL LNPDDRRL LTL+LAQQLMGAPR+L QHPG
Sbjct: 421  DLPEDLIRTLSSGIWSWSETVGERQVRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPG 480

Query: 481  GFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIR 540
            GFVLTHDRLDDLVPIEPATM DRQ+IEWDKDD+EALKF+KVDVLALGMLTCMAKAF LI 
Sbjct: 481  GFVLTHDRLDDLVPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALIS 540

Query: 541  EHKGQQLDLSNIEQEDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAI 600
            EHK + +DL+ I QED ATYAMIRKADTLGTFQIESRAQM+MLPR+KPRTFYDLV+QVAI
Sbjct: 541  EHKHEDIDLATIPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAI 600

Query: 601  VRPGPIQGDMVHPYLRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTG 660
            VRPGPIQGDMVHPYLRRREGKE VEYPTPELEAVL KTLGVPLFQESAMRVAMVCAGFTG
Sbjct: 601  VRPGPIQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTG 660

Query: 661  GEADQLRKSMATFKFTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHA 720
            GEADQLRKSMATFKFTGGVSRFKDKLV+GM++NGY+ EFAEKTFSQLEGFGSYGFPESHA
Sbjct: 661  GEADQLRKSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHA 720

Query: 721  ASFALIAYASNYIKCHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRW 780
            ASFALIAYASNYIKC++PDVFCAALLNSQPMGFYAPAQIV DA +HGVEVRP+C+NRSRW
Sbjct: 721  ASFALIAYASNYIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRW 780

Query: 781  DCTLERIEGSDRHAVRLGFRQVKGLAVADAARIVAARMNNPFASVDDMWRRSSVPTEALV 840
            DC LE I+GS  HAVRLG R V+GLA ADAARIVAAR + PF SVDDMWRRS VP  +LV
Sbjct: 781  DCMLEPIDGSGGHAVRLGMRLVRGLATADAARIVAARADEPFTSVDDMWRRSGVPVASLV 840

Query: 841  QLAEADAFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREATAIAEQQEPEVALRQMTD 900
            +LAEADAFLPSL LERRDALWAIKALRDEPLPLF AAA+REA AIAEQ+EPEV LRQMTD
Sbjct: 841  ELAEADAFLPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIAEQEEPEVELRQMTD 900

Query: 901  GHNVIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPG 960
            G NV+EDYSHTGLTLR+HP+ F+R DL+ R I+ CA+AM A DG+W+  AGLVLVRQ+PG
Sbjct: 901  GQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRPG 960

Query: 961  SAKGVMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRIQREGEVVHLVAQQLF 1020
            SAKGVMFITIEDETG ANIVVWP LFE+ R VVLG+SMMAINGRIQREGEVVHLVAQQLF
Sbjct: 961  SAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRIQREGEVVHLVAQQLF 1020

Query: 1021 DLSADLVGLADRDTGFRLPAGRGDEFAHGG-GGPDSRDRQKP-VVPRDMFTPDLHIDTLK 1078
            DLSADL  LA+RD  FR P GRGDEFAHG  G  DSR +  P V  RD+  PDLHIDTLK
Sbjct: 1021 DLSADLSSLAERDGAFRPPTGRGDEFAHGSPGSADSRGKAPPGVRARDILVPDLHIDTLK 1080

Query: 1079 IKSRNFQ 1085
            IKSRNFQ
Sbjct: 1081 IKSRNFQ 1087