Pairwise Alignments

Query, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1170 a.a., DNA polymerase III, alpha subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  342 bits (876), Expect = 1e-97
 Identities = 303/1103 (27%), Positives = 493/1103 (44%), Gaps = 95/1103 (8%)

Query: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRLV 62
            +  L+V T  S   GA   + L +    +G+ A+ + D  +L G +     +    ++ +
Sbjct: 20   FVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDMGVQPI 79

Query: 63   VGCRLDLT------------------DGMSLLVYPTDRAAYSRLTRLITLGKSRG-GKNN 103
            +GC++ +                   D  ++++   + + Y+ L ++++     G G   
Sbjct: 80   IGCQIAVRNEEVRERGFGAGRDLRAPDPDAVVLLAKNASGYANLMKIVSRSFIEGDGSEA 139

Query: 104  CILHWDDVIAYSRGMI----------GVLVPDLPDATCAAQLRRIAEAFGDRAYVSLCLR 153
              +   D+ A + G+I          G L+ +      AA L R  E FGDR YV +  R
Sbjct: 140  PQVRLADIEALNDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRVYVEI-QR 198

Query: 154  RRQNDQMRLH-EISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFER 212
                D+ R+  ++ +LA    V  V TN+  + +    +  D++ C++  T I D    R
Sbjct: 199  HGMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIGDET-RR 257

Query: 213  ERHADRYLKPPEEMERLFSRYSEALARTLEIVRRCKFSLEELTYQYPEEAIVPGKDAQAS 272
                + Y KP  EM  LF+   EA+  TL I +RC    E+     P    V G+    +
Sbjct: 258  RLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVKGRTEAEA 317

Query: 273  LEHYVWECAPDR-----YPEGLPQ----DVLKTVR----HELDLIRTMKYAPYFLTVFSI 319
            L     E    R     Y EG+ +    ++ K  R    +ELD+I  M +  YFL V   
Sbjct: 318  LCAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFPGYFLIVADF 377

Query: 320  VRFARSQGI-LCQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFE 378
            +++A+   I +  GRGS A S V + L IT +DP    LLFERF++ ER   PD D+DF 
Sbjct: 378  IQWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVSMPDFDIDFC 437

Query: 379  HERREEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKALGLP----EDVIKALSSGM 434
             +RREEVI+++ + Y  ++ A   T  + +A+  +R VG+ L +P    + + K + +  
Sbjct: 438  QDRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDKICKMVPNNP 497

Query: 435  WS--WSEEVPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDL 492
             +    +E  +   +  +L  +D  +A  L +  +L G   H   H  G V+    LD+L
Sbjct: 498  AAPVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVVIGDRPLDNL 557

Query: 493  VPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQQLDLSNI 552
            V +      D  + +++   VE    +K D L L  LT +  A   I + +G  +DL ++
Sbjct: 558  VALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAK-RGITVDLLDL 616

Query: 553  EQEDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVH 612
              +D  +Y M+ + +T G FQ+ES     +L  +KP T  D+V  VA+ RPGP+  D + 
Sbjct: 617  PLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPGPM--DNIP 674

Query: 613  PYLRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMAT 672
             Y++R++G+E V Y    LE +L +T G+ ++QE  M+ A + AG++ G AD LR++M  
Sbjct: 675  SYIKRKKGEEEVVYLHDSLEPILKETYGILIYQEQVMQAAQIMAGYSLGGADLLRRAMGK 734

Query: 673  FKFTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNY 732
             K    +   +   V G  K G S   A + F Q+  F  YGF +SHAA++ L+AY + Y
Sbjct: 735  -KIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGLVAYQTAY 793

Query: 733  IKCHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSDR 792
            +K +YP  F AA +          A   G+  +  + + P  VNRS        + G + 
Sbjct: 794  LKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRS------FAVFGVED 847

Query: 793  HAVRLGFRQVKGLAVADAARIVAAR-MNNPFASVDDMWRR---SSVPTEALVQLAEADAF 848
             AVR     VK +  A    +VA R    PF  + D  RR     +    L  L +A A 
Sbjct: 848  GAVRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENLIKAGA- 906

Query: 849  LPSLKLERRDALWAIKALRDEPLPLFAAAAEREAT-------AIAEQQEPEVALRQMTDG 901
            L SL  +R   L    A  D  +    AAAE  A+             EP +  R     
Sbjct: 907  LDSLDGDRAKLL----ANADVLMRHAQAAAEDRASNQSSLFGGAGATSEPPMKFRACA-A 961

Query: 902  HNVIEDYSH----TGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQ 957
              + E  +H     G  L  HP+      L   +++P         G     +G V +  
Sbjct: 962  WTITETLAHERDAMGFYLSAHPLDIYGDSLERLDVVPIEMLPGHLRGG---GSGAVKLAV 1018

Query: 958  KPGSAK--------GVMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRIQREG 1009
             PG+ K           F+ + D TG    +V+  +    R ++     + +    + EG
Sbjct: 1019 TPGARKERIGKSGSRYAFVELSDATGSCETMVFSEVLGASRELLDSGRPLLVRADARLEG 1078

Query: 1010 EVVHLVAQQLFDLSADLVGLADR 1032
            E V L+AQ + +L  D V  A R
Sbjct: 1079 EEVRLLAQAI-ELLDDAVARAAR 1100