Pairwise Alignments

Query, 350 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 818 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  193 bits (491), Expect = 1e-53
 Identities = 126/344 (36%), Positives = 186/344 (54%), Gaps = 22/344 (6%)

Query: 6   RSKPLLRDTEAPIRSKPRRKRNPAQPQLLFNPMPDRVEPALEQLKAHPPQGDQ------- 58
           R + L+   +AP   KP +    A    +    P+R+EP L      PP+ ++       
Sbjct: 182 RIEELVEKPKAP--PKPVKLNPGALAGAVKAAQPERIEPQLATQTILPPEAEKDSKKPER 239

Query: 59  WSWELKWDGYRLAVHIEPTGVRILTRGGHDWTHRFPAIAEAARALGPATMIIDGEAVVLD 118
           W  E+K+DGYR   H+    VR++TRGG DWT R+  + E  R L    +IIDGE VVLD
Sbjct: 240 WLHEIKFDGYRTMAHVADGKVRLVTRGGLDWTKRYGDLPEVFRRLPCRDVIIDGEIVVLD 299

Query: 119 DEGRPDFGLLQKSLGASGKAAGNRASDAILYAFDLMYLDGHDLREMEYRSRRHLLEDTIK 178
           + G   F LLQ +L      AGN     + YAFDL++L+G +L ++    R+ LL+  + 
Sbjct: 300 ETGVSRFALLQDALST---GAGN---SLVFYAFDLLHLNGWNLFDVPLEKRKALLKQLLA 353

Query: 179 ---ANDGAIRLSETLDADPNVLLEHIRSLGLEGIVGKHLDQPYRSGRAGDWVKVKCIESE 235
              ++  AI+ S+ +  +   L +    +GLEGIV K +  PYRSGR+  W K K +++E
Sbjct: 354 GQVSSRSAIQFSDHVLGEGRALYDRASEMGLEGIVSKRISAPYRSGRSKTWTKTKALKAE 413

Query: 236 AFMVVGYEPSMASPAGFASLVVAAYRGDELIHVGNVGTGFKEAEMIGLRKMLDKLRWKRK 295
            F++VGY  S A+  G ASL +  +   EL + G VGTGF +A+M  L+++L +L   R 
Sbjct: 414 DFVIVGYTVSEAA-EGIASLALGEWADGELEYRGKVGTGF-DAQM--LKELLARLEPLRA 469

Query: 296 PPPVPFTEKTDIVWVEPTLIAEIEFRAWTADGKLRHASYKGLRE 339
                     +I+WV P L A I +   T D  LRHA +KGLR+
Sbjct: 470 GAAKLEGAPREIIWVRPLLRAHIHYGNRTTDNVLRHAVFKGLRD 513