Pairwise Alignments

Query, 480 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 500 a.a., KaiC from Pseudomonas fluorescens FW300-N2E2

 Score =  365 bits (937), Expect = e-105
 Identities = 199/466 (42%), Positives = 286/466 (61%), Gaps = 12/466 (2%)

Query: 10  ATTGIAGLDEILRGGLPASNLYILQGAPGSGKTTAALQFLRAGVAAGESCIYVTLSQTAA 69
           A TGI GLD++L GGL   ++++L+G PG+GKTT AL FL AG  AGE  +Y+TLS+T  
Sbjct: 12  AATGIEGLDDVLSGGLSRGHVFLLEGEPGTGKTTVALHFLLAGAKAGERSLYITLSETER 71

Query: 70  ELKAIAVSHGWTLD-GIRIEELATSGSVNEAD-DQSIFMTSDLRLDETRKAIEAAIEEHK 127
           EL+  A SHGWTLD  I I EL    S+  A+  QS+  +SDL L E  + I   +E  K
Sbjct: 72  ELRQGATSHGWTLDDNIHIFELTPPESLLNAEHQQSLLYSSDLELGEATRQIFEVVERVK 131

Query: 128 PRRLVYDSLLEIRLITGDSPRFRRELIAFKAFLAKQDVVALLLD---TQSSDFDRSGEEM 184
           P R+V DSL EIRL+   S R+RR+++A K +  + D   LLLD   T+S D     + +
Sbjct: 132 PTRVVLDSLSEIRLLAQSSLRYRRQILAIKHYFVRYDATVLLLDDLTTESLD-----KTV 186

Query: 185 EGLAHGVIRFDKSLEEYGGVRRRVEISKMRSVPIADGYHDMAIREGEGVVIFPRIMPSAA 244
             +AHGVIR ++    YG  RRR+ + K R      GYHD  I  G+GV +FPR++ +  
Sbjct: 187 HSVAHGVIRLEELTPNYGAERRRIRVVKYRGQKYRGGYHDFTIM-GDGVHVFPRLVAAEH 245

Query: 245 SDTGKPQLIKSGVAELDEMFGGGQEAGTTTLVIGQAGTGKSTMSSLYATAALERGENVAL 304
                 Q + SG+ E+D + GGG E G++TL++G AGTGKS ++ ++A AA+ RGE  AL
Sbjct: 246 RGQYLRQQLSSGIGEMDALLGGGIETGSSTLILGPAGTGKSLIAMIFAAAAVHRGEKAAL 305

Query: 305 FLFEERLETFFRRSEGLGMQLRQFHKDGRLILRDFNPNEISPGEFGQIVRDAVTQNKSKV 364
           F+F+E L   F R + +G+ L+   + G L++   +  E+SPGEF   VR  V +   K 
Sbjct: 306 FIFDEELGLLFERMKNIGIDLQALQETGNLLIEQVDAAELSPGEFSHRVRRCVDEGDIKT 365

Query: 365 VVIDSLTGYLNSLPHRDKAVRDIQSLLKYLARSGVLTMLIVAQHGLLGQNVGIDVDVSFL 424
           VVIDS+ GY  ++P  +  V  +  LL YL R G  T + VAQHGL+G ++   VD+++L
Sbjct: 366 VVIDSINGYQAAMPEENALVLHMHELLLYLNRKGAATFMTVAQHGLVG-DMQAPVDITYL 424

Query: 425 GDTVLLLRIMEHEGRLRRNITVVKKRHGPHDLDVRELIIESGNVSV 470
            DTV+LLR  E  G++RR I+++KKR G H+  +RE  I    +++
Sbjct: 425 ADTVILLRYFEALGKVRRAISIIKKRTGSHESTIREYRISGLGMTI 470