Pairwise Alignments

Query, 480 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

 Score = 46.6 bits (109), Expect = 2e-09
 Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 29/198 (14%)

Query: 255 SGVAELDEMFGGGQEAGTTTLVIGQAGTGKSTMSSLYATAALERGENVALFLF-EERLET 313
           SG  ELD + GGG   G   L+ G  G GKST+  L  T  L  G+   L++  EE L+ 
Sbjct: 77  SGFKELDRVLGGGIVPGAAILIGGNPGAGKSTL--LLQTMCLLSGQMPTLYVTGEESLQQ 134

Query: 314 FFRRSEGLGMQLRQFHKDGRLILRDFNPNEISPGEFGQIVRDAVTQNKSKVVVIDSL--- 370
              R+  LG+      K    +L + N + I              Q K +++VIDS+   
Sbjct: 135 VAMRASRLGLP-----KQHLKMLSETNVDRIC---------QIAEQEKPRIMVIDSIQVM 180

Query: 371 -TGYLNSLPHRDKAVRDIQSLLKYLARSGVLTMLIVAQHGLLGQNVG-------IDVDVS 422
               + S P     VR+  + L   A+   + + IV      G   G       ID  + 
Sbjct: 181 HVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSIL 240

Query: 423 FLGDTVLLLR-IMEHEGR 439
             GDT    R +  H+ R
Sbjct: 241 LDGDTDSRFRTLRSHKNR 258



 Score = 38.9 bits (89), Expect = 4e-07
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 30/165 (18%)

Query: 11  TTGIAGLDEILRGGLPASNLYILQGAPGSGKTTAALQFLRAGVAAGESCIYVTLSQTAAE 70
           T+G   LD +L GG+      ++ G PG+GK+T  LQ +   ++     +YVT  ++   
Sbjct: 76  TSGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTM-CLLSGQMPTLYVTGEES--- 131

Query: 71  LKAIAVSHGWTLDGIRIEELATSGSVNEADDQSIFMTSDLRLDETRKAIEAAIEEHKPRR 130
                           ++++A   S      Q + M S+  +D     I    E+ KPR 
Sbjct: 132 ----------------LQQVAMRASRLGLPKQHLKMLSETNVDR----ICQIAEQEKPRI 171

Query: 131 LVYDSL-----LEIRLITGDSPRFRRELIAFKAFLAKQDVVALLL 170
           +V DS+      +++   G   + R    A   + AKQ+ VA+ +
Sbjct: 172 MVIDSIQVMHVADVQSSPGSVAQVRESATALTRY-AKQNNVAVFI 215