Pairwise Alignments

Query, 505 a.a., ABC transporter substrate binding protein (dipeptide) from Agrobacterium fabrum C58

Subject, 529 a.a., extracellular solute-binding protein, family 5 (NCBI) from Rhodospirillum rubrum S1H

 Score =  158 bits (400), Expect = 4e-43
 Identities = 147/518 (28%), Positives = 226/518 (43%), Gaps = 49/518 (9%)

Query: 10  ILGSVLAFGSGIAPANAASTDIKIVLPEEADLLEPCMATRSNIGRVIMENVSETLTELDV 69
           ++G+  A    +A + A +  +        +   P   T         +N+ + L  L  
Sbjct: 5   VIGAASAVILAMAASGAQAKTLVYCSEGSPEGFNPAFYTTGTTFDATSKNIFDKLV-LFK 63

Query: 70  RGKQGVMPRLAEKWEQTGDS-AWRFHLRQGVKFSDG------KTFGAKDVKYSFDRIFSD 122
           RG   + P LAE WE + D   + FHLR+GV F D       + F A DV +SF+R    
Sbjct: 64  RGTTEIEPGLAESWEVSPDGKTYTFHLRKGVTFHDSDIFKPTRQFNADDVIWSFERQLKK 123

Query: 123 KNICESRR-----YFGGMKFD-----VKVVDDNTIDFKVDPVQPILPLLLSLVT------ 166
            +   +       YF GM  +     ++ VDD T+ F +   +P  P+L +L        
Sbjct: 124 DHPYHAVSGGTYDYFEGMSMNTLLEKIEKVDDYTVVFHLS--RPEAPMLANLAMDFASIF 181

Query: 167 -------IVPDGTPLAFVREPIGTGPYKLSNWTPGQQIVLDARDDYWGKKPAVTKATYLF 219
                  ++  GTP    ++PIGTGP+    +    QI  +A   YW  K A+ +  ++ 
Sbjct: 182 SAEYADKMMKAGTPEVVDQKPIGTGPFMFRGYQKDAQIRYEANPTYWQGKAAIDRLVFVI 241

Query: 220 RADPAVRAAMVQAGEADLAPSISQVDATNDKTD--FSYLDSETV---YLRLDGNIAPLND 274
             D +VR A ++AGE  + P  +  D    KTD   + +  E +   YL  +    P +D
Sbjct: 242 TPDASVRYAKLKAGECHVMPYPNPADLEAMKTDKAVNLMHQEGLNVGYLAYNVEKKPFDD 301

Query: 275 VRVRKALNLAIDRQAFIGTLVPQDAVLATALVPPTTLGWNPDVKVFPYDPDQAKKLLEEA 334
           VRVRKALNLAID++A I  +       AT  +PPT   +N  VK   +DP  AKKLL EA
Sbjct: 302 VRVRKALNLAIDKKAIIDAVYQGAGTAATNPIPPTIWSYNKAVKDDAFDPAAAKKLLAEA 361

Query: 335 KAGGVPVDNPITIIARTANFPNVTEIMEAVQAQLQDVGFKVELRFVEVAEHEVYYSKPFK 394
               +        + R  N PN   + E +QA  + VG   E+   E  E    Y K  K
Sbjct: 362 GVKDLKTTIWAMPVQRPYN-PNARRMAEILQANWKAVGVDAEITSYEWGE----YLKRAK 416

Query: 395 EG-RGPQIVAAMHDNSKGDPSFTMFFKYDT--NGTQSGFSDKNVDDLIKRASAATG-DER 450
            G     +     DN   D    +    D       + + DK+ ++LI++A  AT  +ER
Sbjct: 417 AGEHETALFGWTGDNGDPDNFLAVLLGCDAIPGNNYARWCDKSFENLIQKAKIATSQEER 476

Query: 451 AKLWSQLIAYVHDDLVADVLLFHMVGYSRV-SERLDFK 487
            KL+ +    +  +      + H V Y  +  E +D+K
Sbjct: 477 VKLYEE-AQVIFKEQAPWATIAHSVVYEPIRKEVIDYK 513