Pairwise Alignments

Query, 304 a.a., ABC transporter membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  193 bits (490), Expect = 5e-54
 Identities = 104/308 (33%), Positives = 176/308 (57%), Gaps = 6/308 (1%)

Query: 1   MLRFIRKRALASLISLIGLLIMVFFLSRLT-GDPASLFLPVEASAEMKAEFRALHGLDQP 59
           ML+FI KR   ++ +++ L+ + FFL R   G+P S   P+    E+ A   A +GLD+P
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPP--EVMANINAKYGLDKP 58

Query: 60  LLVQFVQYVGNVMTGDLGESLR-KARPALDVVLEAFTWTLWLAVITMTLVTICAIVVGSL 118
           +  Q++ Y+ N++ GD G S + K     +++  A   ++ + +       I  + VG++
Sbjct: 59  VSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTI 118

Query: 119 AAFRTGGFFDRFSSMVSLIGASVPDFWLAIVAIVVFAIQLSWLPTSG--TGTLSHWILPI 176
           AA +   + D      +++G  +P F LA V I +FAIQ S  P  G   G   +  LP+
Sbjct: 119 AALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMALPV 178

Query: 177 CVLFVRPFGIIVQVVRGSMISALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGD 236
             + +       ++ RGSMI  L+S +++TARAKG+  G I+  HAL+ A+LPV++ +G 
Sbjct: 179 LGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGP 238

Query: 237 QAASLLNGAVVIETIFGFPGVGKLMIDSILQRDFNVVLAAILVTAFAIFLMNLVIDLAYA 296
               ++ G+VVIETIFG PG+GKL +++   RD+++V+   ++  F   L N ++D+  A
Sbjct: 239 AFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLA 298

Query: 297 LLDPRIRY 304
            +DP+IRY
Sbjct: 299 YIDPKIRY 306