Pairwise Alignments

Query, 539 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 536 a.a., microcin ABC transporter ATP-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  436 bits (1122), Expect = e-127
 Identities = 242/528 (45%), Positives = 340/528 (64%), Gaps = 16/528 (3%)

Query: 3   DHLLEVRNLSVDFYTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLIDMP 62
           D+L+EVR+L+V+F       + V  +S+ + RGETLA++GESGSGKSV++ +I+ L+  P
Sbjct: 4   DNLIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYP 63

Query: 63  PGKISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREALRTH 122
                +G I   G+DLL +     R + G  IAMIFQ+P++ LNP++ +  Q+ E L  H
Sbjct: 64  LAHHPTGTIQYAGQDLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHCIEKQINEVLGIH 123

Query: 123 -GIDNRQAQVEALRLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNLLIADE 181
            G+  + A    L L + V +PEP K +   PHE SGGQRQRVMIAMALA +P LLIADE
Sbjct: 124 KGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADE 183

Query: 182 PTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVESGTVR 241
           PTTALDVTVQ ++L LLKELQ   GM +L+I+HDL +V  +A RV VM++G +VE  +  
Sbjct: 184 PTTALDVTVQLKILQLLKELQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCE 243

Query: 242 EVYRNPQHPYTKKLIAAAPGKGQLHEPSTDGEPILKVRNA-----------RKSYGGFEA 290
           E++R PQHPYT++L+ A P     +  +  G P+L+V +            +++    +A
Sbjct: 244 ELFRAPQHPYTRELLGAEPSGTPAN--NVVGPPLLQVEDLKVWFPIKKGLFKRTVDYIKA 301

Query: 291 LKGISFDLKAGETVAVVGESGSGKSTLARILLRLDDPDSGTAHWKGQDLFTLSPSELFKL 350
           + GI F L  G+T+ +VGESGSGKSTL   +LRL     G   ++G+ L +L+  ++  L
Sbjct: 302 VDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSQGG-IRFEGKPLDSLTQQQVRPL 360

Query: 351 RRDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPEILPKAKWRARAAELLERVGLSPEHMG 410
           RR++Q+VFQDP  SL+PRM V Q++ E   IH +I   A+        L+ VGL PE   
Sbjct: 361 RREMQVVFQDPFGSLSPRMCVSQIVGEGLRIH-KIGTAAEQEQAIIAALKEVGLDPETRN 419

Query: 411 RYPHQFSGGQRQRIAIARALALEPQLIVCDEAVSALDVSVQAQVVRLLDKLRREMGIAFI 470
           RYPH+FSGGQRQRIAIARAL L+P LI+ DE  SALD +VQ QVV LL  L+ +  + ++
Sbjct: 420 RYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYL 479

Query: 471 FIAHDLPLVRDFADYVMVMQKGEVVEFGTVAQVFDNPQQRYTQALISA 518
           FI+HDL +V+  +  +MV++ G+VVE G    +F  PQ  YTQ L+ A
Sbjct: 480 FISHDLAVVKALSHQLMVVKHGQVVEQGDARSIFAAPQHPYTQQLLEA 527



 Score =  178 bits (451), Expect = 5e-49
 Identities = 111/263 (42%), Positives = 156/263 (59%), Gaps = 17/263 (6%)

Query: 5   LLEVRNLSVDFYTATGT-------VKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMN 57
           LL+V +L V F    G        +KAV  I + + +G+TL I+GESGSGKS    AI+ 
Sbjct: 275 LLQVEDLKVWFPIKKGLFKRTVDYIKAVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILR 334

Query: 58  LIDMPPGKISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMRE 117
           LI       S G I   GK L  ++    R +  R + ++FQDP   L+P   V   + E
Sbjct: 335 LIG------SQGGIRFEGKPLDSLTQQQVRPLR-REMQVVFQDPFGSLSPRMCVSQIVGE 387

Query: 118 ALRTHGIDNRQAQVEAL-RLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNL 176
            LR H I     Q +A+    K V L +PE   ++YPHEFSGGQRQR+ IA AL LKP L
Sbjct: 388 GLRIHKIGTAAEQEQAIIAALKEVGL-DPETR-NRYPHEFSGGQRQRIAIARALVLKPAL 445

Query: 177 LIADEPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVE 236
           ++ DEPT+ALD TVQ +V+ LL+ LQ +  +  L I+HDL VV  ++ +++V++ G +VE
Sbjct: 446 ILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKHGQVVE 505

Query: 237 SGTVREVYRNPQHPYTKKLIAAA 259
            G  R ++  PQHPYT++L+ AA
Sbjct: 506 QGDARSIFAAPQHPYTQQLLEAA 528