Pairwise Alignments

Query, 539 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  434 bits (1117), Expect = e-126
 Identities = 240/559 (42%), Positives = 349/559 (62%), Gaps = 51/559 (9%)

Query: 5   LLEVRNLSVDFYTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLIDMPPG 64
           LLEV+NL +++ +  G   AV++++  + RGE + ++GESG+GKS   +A+++L+  PPG
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLS-PPG 61

Query: 65  KISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREALRTH-G 123
            I+ GE+ LNG+ +  +S    R V G  I  IFQDP++ LNP++TV  Q+ E +  +  
Sbjct: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121

Query: 124 IDNRQAQVEALRLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNLLIADEPT 183
           +   +A   AL L K+V +P+PE  + +YPH+FSGG RQRV+IA+ALA +P+L+IADEPT
Sbjct: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181

Query: 184 TALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVESGTVREV 243
           TALDV++Q ++L L++EL ++  +G +++THD+GVVS V DRV VM +G LVE G   +V
Sbjct: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241

Query: 244 YRNPQHPYTKKLIAAAP-------------------------------GKGQLHEPSTDG 272
              P+HPYT+ LI+A P                               G+ Q H   T  
Sbjct: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTG- 300

Query: 273 EPILKVRN-------------ARKSYGGFEALKGISFDLKAGETVAVVGESGSGKSTLAR 319
            P+LKV N             +R+ Y   +A   +SF +  GET  +VGESGSGKST+AR
Sbjct: 301 -PLLKVENVNLRFVTKDSLFESRREY--VQASNNVSFAVHEGETFGLVGESGSGKSTIAR 357

Query: 320 ILLRLDDPDSGTAHWKGQDLFTL-SPSELFKLRRDLQMVFQDPTQSLNPRMTVYQLISEA 378
           ++  L  P++G   ++G DL  L S  E   LRR +QMVFQ+P  S+NPRM ++ +I+E 
Sbjct: 358 VIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEP 417

Query: 379 WVIHPEILPKAKWRARAAELLERVGLSPEHMGRYPHQFSGGQRQRIAIARALALEPQLIV 438
              H     +++ R    +LLE VGL      +YPH+FSGGQRQRI+IARALA  P+L++
Sbjct: 418 IRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLI 477

Query: 439 CDEAVSALDVSVQAQVVRLLDKLRREMGIAFIFIAHDLPLVRDFADYVMVMQKGEVVEFG 498
           CDE  SALDVSVQAQ++ LL  L+ E+ +  +FI+HDLP++R   D V VMQ G ++E  
Sbjct: 478 CDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVA 537

Query: 499 TVAQVFDNPQQRYTQALIS 517
              Q+F +PQ  Y++ LIS
Sbjct: 538 PTEQLFTDPQHEYSKKLIS 556



 Score =  185 bits (469), Expect = 5e-51
 Identities = 109/275 (39%), Positives = 162/275 (58%), Gaps = 16/275 (5%)

Query: 5   LLEVRNLSVDFYTATGT-------VKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMN 57
           LL+V N+++ F T           V+A  N+S+ V  GET  ++GESGSGKS  +  I  
Sbjct: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361

Query: 58  LIDMPPGKISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMRE 117
           L        ++G +   G DL  + ++  R    R + M+FQ+P + +NP   +   + E
Sbjct: 362 LYQP-----NAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAE 416

Query: 118 ALRTHGIDNRQAQVEAL--RLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPN 175
            +R H +   +++   +   L + V L +   A  KYPHEFSGGQRQR+ IA ALA +P 
Sbjct: 417 PIRFHKLTRSESETRQIVNDLLEHVGLGK--MAGLKYPHEFSGGQRQRISIARALATRPR 474

Query: 176 LLIADEPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLV 235
           LLI DEPT+ALDV+VQA++L LLK+LQ E  + +L I+HDL V+ ++ DRV VM+ G L+
Sbjct: 475 LLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLL 534

Query: 236 ESGTVREVYRNPQHPYTKKLIAAAPGKGQLHEPST 270
           E     +++ +PQH Y+KKLI+  P    L E +T
Sbjct: 535 EVAPTEQLFTDPQHEYSKKLISLMPEFTGLRESTT 569



 Score =  172 bits (437), Expect = 2e-47
 Identities = 100/255 (39%), Positives = 158/255 (61%), Gaps = 12/255 (4%)

Query: 275 ILKVRNARKSY----GGFEALKGISFDLKAGETVAVVGESGSGKSTLARILLRLDDPDS- 329
           +L+V+N R  Y    G   A+K ++ D++ GE V VVGESG+GKST+   ++ L  P   
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62

Query: 330 ---GTAHWKGQDLFTLSPSELFKLRRD-LQMVFQDPTQSLNPRMTVYQLISEAWVIHPEI 385
              G  +  G+ +  LSP  + ++R   +  +FQDP  SLNP  TV   ++E    + ++
Sbjct: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122

Query: 386 LPKAKWRARAAELLERVGL-SPEH-MGRYPHQFSGGQRQRIAIARALALEPQLIVCDEAV 443
             +  ++ RA  L+++VG+  PE+ + +YPHQFSGG RQR+ IA ALA EP LI+ DE  
Sbjct: 123 SAEEAYQ-RALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181

Query: 444 SALDVSVQAQVVRLLDKLRREMGIAFIFIAHDLPLVRDFADYVMVMQKGEVVEFGTVAQV 503
           +ALDVS+Q Q++ L+ +L ++  +  + + HD+ +V +  D V VM +G++VEFG  A+V
Sbjct: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241

Query: 504 FDNPQQRYTQALISA 518
              P+  YT++LISA
Sbjct: 242 LGTPEHPYTRSLISA 256