Pairwise Alignments

Query, 539 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 542 a.a., peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  410 bits (1053), Expect = e-119
 Identities = 227/527 (43%), Positives = 331/527 (62%), Gaps = 19/527 (3%)

Query: 3   DHLLEVRNLSVDFYTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLIDMP 62
           D LL V  LS++    TG  + V+++S+ +  GE   I+GESGSGK++++ A+++L+  P
Sbjct: 4   DKLLTVCGLSLEV-ARTGQ-QVVKSVSFDLAPGEIFGIVGESGSGKTLATRALISLLP-P 60

Query: 63  PGKISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREALRTH 122
             K++ G +   G+D+LKM  ++ R + G  I ++FQ+P++ LNP  T+G Q+ E L  H
Sbjct: 61  TIKVADGSVSYKGRDVLKMKENELRHLRGAEIGVVFQEPMTSLNPSMTIGRQLEEGLILH 120

Query: 123 GIDNRQAQVEA-LRLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNLLIADE 181
              + Q +    L + KRV + +PE A+  YPHEFSGG RQR+M+A  + LKP LLIADE
Sbjct: 121 TKASAQERRSLILDMLKRVGIRDPEGALSSYPHEFSGGMRQRIMLASVMLLKPALLIADE 180

Query: 182 PTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVESGTVR 241
           PTTALD  +Q +V+ L+ EL R  G  +L+I+HDL +V+    R+VVMEKG +VE G   
Sbjct: 181 PTTALDAVIQRDVMELMVELTRAEGTAILLISHDLPMVARYTSRIVVMEKGAIVEKGRTE 240

Query: 242 EVYRNPQHPYTKKLIAAAPGKGQLHEPSTDGEPILKVRNARKSYGGFE----------AL 291
           ++ + PQHPYTKKL+++ P +G+  +      P++  R+    Y G +          AL
Sbjct: 241 DLLKAPQHPYTKKLLSSLPFRGRPRQIDLTSVPMISARDIIVDYAGRKSLFRKNKPKRAL 300

Query: 292 KGISFDLKAGETVAVVGESGSGKSTLARILLRLDDPDSGTAHWKGQDLFTLSPSELFKLR 351
            G+S D+  GE VA+VG SGSGK+TL R +  L     G   ++G+             R
Sbjct: 301 HGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGLVTESEGRIQFQGRP----RTENWTDYR 356

Query: 352 RDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPEILPKAKWRARAAELLERVGLSPEHMGR 411
            + QMVFQDP  SL+PRMT+  L+ EA    P +  KAK R R  E LE VGL  ++ GR
Sbjct: 357 LNCQMVFQDPYSSLDPRMTIEALVEEALRPVPGLDGKAK-RKRTLETLEEVGLGVDYAGR 415

Query: 412 YPHQFSGGQRQRIAIARALALEPQLIVCDEAVSALDVSVQAQVVRLLDKLRREMGIAFIF 471
           YPH+ SGGQRQR+AIARA+A  P+ ++ DE VSALDV+V+AQV+ L   L++  G + +F
Sbjct: 416 YPHELSGGQRQRVAIARAIARRPRFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLF 475

Query: 472 IAHDLPLVRDFADYVMVMQKGEVVEFGTVAQVFDNPQQRYTQALISA 518
           I+HDL +V   AD V+VMQ G ++E G    +FD+P++ YT+ L+SA
Sbjct: 476 ISHDLGVVEQVADRVVVMQDGRIIEEGDRDTIFDSPKEAYTRRLLSA 522



 Score =  169 bits (427), Expect = 3e-46
 Identities = 104/270 (38%), Positives = 150/270 (55%), Gaps = 25/270 (9%)

Query: 5   LLEVRNLSVDF------YTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNL 58
           ++  R++ VD+      +      +A+  +S  +  GE +A++G SGSGK+     I  L
Sbjct: 274 MISARDIIVDYAGRKSLFRKNKPKRALHGVSIDIHEGEVVALVGGSGSGKTTLGRTIAGL 333

Query: 59  IDMPPGKISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREA 118
           +       S G I   G+   +   D R         M+FQDP S L+P  T+   + EA
Sbjct: 334 VTE-----SEGRIQFQGRPRTENWTDYRLNCQ-----MVFQDPYSSLDPRMTIEALVEEA 383

Query: 119 LR-THGIDNRQAQVEALRLFKRVALPEPEKAVD---KYPHEFSGGQRQRVMIAMALALKP 174
           LR   G+D +  +   L   + V L      VD   +YPHE SGGQRQRV IA A+A +P
Sbjct: 384 LRPVPGLDGKAKRKRTLETLEEVGL-----GVDYAGRYPHELSGGQRQRVAIARAIARRP 438

Query: 175 NLLIADEPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVL 234
             LIADEP +ALDVTV+A+VL L  +LQ+  G   L I+HDLGVV +VADRVVVM+ G +
Sbjct: 439 RFLIADEPVSALDVTVRAQVLDLFSDLQKRYGFSCLFISHDLGVVEQVADRVVVMQDGRI 498

Query: 235 VESGTVREVYRNPQHPYTKKLIAAAPGKGQ 264
           +E G    ++ +P+  YT++L++A P   Q
Sbjct: 499 IEEGDRDTIFDSPKEAYTRRLLSAIPALDQ 528