Pairwise Alignments

Query, 539 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 622 a.a., ABC transporter ATP-binding protein from Rahnella sp. WP5

 Score =  449 bits (1154), Expect = e-130
 Identities = 255/578 (44%), Positives = 356/578 (61%), Gaps = 59/578 (10%)

Query: 5   LLEVRNLSVDFYTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLIDMPPG 64
           +L++ +LSV F    G  +A++ +S+ +++GE +A++GESGSGKSV+S ++M L+     
Sbjct: 5   ILQINDLSVTFSGRQGKTQALKGVSFSINKGEVVAVVGESGSGKSVTSLSVMGLLP-DSA 63

Query: 65  KISSGEILLNGKD-----LLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREAL 119
            + +G I   G++     L  +SA+ RR + G+ ++MIFQ+P++ LNPV  VG Q+ E L
Sbjct: 64  HVDAGSIEFFGRNGKCHTLTSLSAESRRKLRGQEMSMIFQEPMTSLNPVLRVGDQLTEGL 123

Query: 120 RTHGIDNRQAQVEALR-LFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNLLI 178
             HG+ N+   +   R L K+V +P+ E+ +  YPHE SGG RQRVMIA ALA  P LLI
Sbjct: 124 LDHGMANKATALNKARELLKQVRIPDVERILKCYPHELSGGMRQRVMIAQALACDPALLI 183

Query: 179 ADEPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVESG 238
           ADEPTTALDVTVQA +L +L++LQ+ T M VL ITHD+GVV+E+ADRVVVM +G +VE G
Sbjct: 184 ADEPTTALDVTVQARILQILRDLQQGTDMSVLFITHDMGVVAEIADRVVVMYQGQVVEQG 243

Query: 239 TVREVYRNPQHPYTKKLIAAAP-------------------------------------- 260
           +V E++ N QHPYT+ L+AA P                                      
Sbjct: 244 SVTEIFANAQHPYTRALLAAVPKLGDMQGLKWPRRFPLLRDKTGQNISPEKQSVAGDHPH 303

Query: 261 ---GKGQLHEPSTDGEPILKVRNARKSY-----------GGFEALKGISFDLKAGETVAV 306
              G G     + D  P+L VR  R  Y               A++ I F +  GET+A+
Sbjct: 304 ISAGDGDQKTANYDAPPLLDVRGLRVCYPIRSGVLSRVTKEVHAVEQIDFSIWPGETLAL 363

Query: 307 VGESGSGKSTLARILLRLDDPDSGTAHWKGQDLFTLSPSELFKLRRDLQMVFQDPTQSLN 366
           VGESG GKST  R +LRL   +S + H +G+++  +  +    +RR +QMVFQDP  SLN
Sbjct: 364 VGESGCGKSTTGRAILRLVGSESESIHLEGKEITLMRDTPFQAVRRQIQMVFQDPYASLN 423

Query: 367 PRMTVYQLISEAWVIHPEILPKAKWRARAAELLERVGLSPEHMGRYPHQFSGGQRQRIAI 426
           PR+TV   I+E  ++H      A       +LL+ VGL P H  RYPH+FSGGQRQRIAI
Sbjct: 424 PRLTVGFSIAEPLLLHGLKKSLADATPVVNQLLKSVGLEPFHARRYPHEFSGGQRQRIAI 483

Query: 427 ARALALEPQLIVCDEAVSALDVSVQAQVVRLLDKLRREMGIAFIFIAHDLPLVRDFADYV 486
           ARA+AL+PQ+I+ DEAVSALDVS+QAQVV L+  L+R+ G+A++FI+HD+ +V   A+ V
Sbjct: 484 ARAMALQPQVIIADEAVSALDVSIQAQVVNLMMDLQRDTGVAWLFISHDMAVVERIANRV 543

Query: 487 MVMQKGEVVEFGTVAQVFDNPQQRYTQALISATLDPDP 524
            VM  G++VE G    VF NP+  YTQ L+S+    DP
Sbjct: 544 AVMYSGQIVEIGPRDAVFSNPKHPYTQRLLSSVPVADP 581



 Score =  197 bits (501), Expect = 1e-54
 Identities = 119/268 (44%), Positives = 166/268 (61%), Gaps = 17/268 (6%)

Query: 2   ADHLLEVRNLSVDFYTATGT-------VKAVRNISYHVDRGETLAILGESGSGKSVSSSA 54
           A  LL+VR L V +   +G        V AV  I + +  GETLA++GESG GKS +  A
Sbjct: 318 APPLLDVRGLRVCYPIRSGVLSRVTKEVHAVEQIDFSIWPGETLALVGESGCGKSTTGRA 377

Query: 55  IMNLIDMPPGKISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQ 114
           I+ L+        S  I L GK++  M     +AV  R I M+FQDP + LNP  TVG+ 
Sbjct: 378 ILRLVGS-----ESESIHLEGKEITLMRDTPFQAVR-RQIQMVFQDPYASLNPRLTVGFS 431

Query: 115 MREALRTHGIDNRQAQVEAL--RLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALAL 172
           + E L  HG+    A    +  +L K V L EP  A  +YPHEFSGGQRQR+ IA A+AL
Sbjct: 432 IAEPLLLHGLKKSLADATPVVNQLLKSVGL-EPFHA-RRYPHEFSGGQRQRIAIARAMAL 489

Query: 173 KPNLLIADEPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKG 232
           +P ++IADE  +ALDV++QA+V+ L+ +LQR+TG+  L I+HD+ VV  +A+RV VM  G
Sbjct: 490 QPQVIIADEAVSALDVSIQAQVVNLMMDLQRDTGVAWLFISHDMAVVERIANRVAVMYSG 549

Query: 233 VLVESGTVREVYRNPQHPYTKKLIAAAP 260
            +VE G    V+ NP+HPYT++L+++ P
Sbjct: 550 QIVEIGPRDAVFSNPKHPYTQRLLSSVP 577



 Score =  170 bits (430), Expect = 2e-46
 Identities = 105/261 (40%), Positives = 166/261 (63%), Gaps = 17/261 (6%)

Query: 274 PILKVRNARKSYGG----FEALKGISFDLKAGETVAVVGESGSGKS-TLARILLRLDDP- 327
           PIL++ +   ++ G     +ALKG+SF +  GE VAVVGESGSGKS T   ++  L D  
Sbjct: 4   PILQINDLSVTFSGRQGKTQALKGVSFSINKGEVVAVVGESGSGKSVTSLSVMGLLPDSA 63

Query: 328 --DSGTAHWKGQD-----LFTLSPSELFKLR-RDLQMVFQDPTQSLNPRMTVYQLISEAW 379
             D+G+  + G++     L +LS     KLR +++ M+FQ+P  SLNP + V   ++E  
Sbjct: 64  HVDAGSIEFFGRNGKCHTLTSLSAESRRKLRGQEMSMIFQEPMTSLNPVLRVGDQLTEGL 123

Query: 380 VIHPEILPKAKWRARAAELLERVGLSPEH--MGRYPHQFSGGQRQRIAIARALALEPQLI 437
           + H  +  KA    +A ELL++V +      +  YPH+ SGG RQR+ IA+ALA +P L+
Sbjct: 124 LDHG-MANKATALNKARELLKQVRIPDVERILKCYPHELSGGMRQRVMIAQALACDPALL 182

Query: 438 VCDEAVSALDVSVQAQVVRLLDKLRREMGIAFIFIAHDLPLVRDFADYVMVMQKGEVVEF 497
           + DE  +ALDV+VQA+++++L  L++   ++ +FI HD+ +V + AD V+VM +G+VVE 
Sbjct: 183 IADEPTTALDVTVQARILQILRDLQQGTDMSVLFITHDMGVVAEIADRVVVMYQGQVVEQ 242

Query: 498 GTVAQVFDNPQQRYTQALISA 518
           G+V ++F N Q  YT+AL++A
Sbjct: 243 GSVTEIFANAQHPYTRALLAA 263